Conservation of cofitness between PP_4546 and PP_1994 in Pseudomonas putida KT2440

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4546 ATP-dependent helicase HrpA 1.0 PP_1994 tRNA pseudouridine (38-40)synthase 0.44 12
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.78 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas simiae WCS417 0.85 PS417_20575 ATP-dependent helicase HrpA 0.76 PS417_18565 pseudouridine synthase — —
Pseudomonas sp. RS175 0.85 PFR28_00739 hypothetical protein 0.78 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_18225 ATP-dependent RNA helicase HrpA 0.77 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_04280 ATP-dependent RNA helicase HrpA 0.76 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.79 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.78 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.71 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas stutzeri RCH2 0.78 Psest_1339 ATP-dependent helicase HrpA 0.70 Psest_2585 pseudouridylate synthase I low > 67
Marinobacter adhaerens HP15 0.48 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.50 HP15_1829 tRNA pseudouridine synthase A low > 73
Shewanella loihica PV-4 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.52 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Shewanella sp. ANA-3 0.48 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.53 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Dickeya dadantii 3937 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.51 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Serratia liquefaciens MT49 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA 0.53 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_06950 ATP-dependent RNA helicase HrpA 0.52 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.54 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola ME23 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.51 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola 67-19 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.51 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.54 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Escherichia coli Nissle 1917 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.53 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA — —
Escherichia fergusonii Becca 0.47 EFB2_02565 hypothetical protein 0.53 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli ECRC99 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.53 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.53 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.53 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.53 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.53 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.47 ECD_01368 putative ATP-dependent helicase 0.53 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECOR38 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.53 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Shewanella amazonensis SB2B 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.53 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Escherichia coli ECRC62 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.53 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECOR27 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.53 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1357 RNA helicase HrpA 0.54 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Escherichia coli BW25113 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) 0.53 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02301 hypothetical protein 0.53 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Enterobacter sp. TBS_079 0.47 MPMX20_02189 hypothetical protein 0.54 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.54 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.50 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Rahnella sp. WP5 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.53 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Alteromonas macleodii MIT1002 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.50 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.51 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13030 ATP-dependent helicase 0.38 RR42_RS14370 tRNA pseudouridine synthase A — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.42 52
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.41 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.41 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Dechlorosoma suillum PS 0.41 Dsui_1373 ATP-dependent helicase HrpA 0.46 Dsui_3194 pseudouridylate synthase I low > 51
Castellaniella sp019104865 MT123 0.40 ABCV34_RS02420 ATP-dependent RNA helicase HrpA 0.41 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Paraburkholderia graminis OAS925 0.40 ABIE53_002813 ATP-dependent helicase HrpA 0.45 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA 0.50 B158DRAFT_1483 pseudouridylate synthase I low > 40
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17315 ATP-dependent helicase 0.43 HSERO_RS16485 tRNA pseudouridine synthase A low > 78
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.39 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.39 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.42 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Variovorax sp. SCN45 0.38 GFF247 ATP-dependent helicase HrpA 0.40 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.50 MPMX26_00352 tRNA pseudouridine synthase A 0.66 10
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS05625 ATP-dependent RNA helicase HrpA 0.47 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Lysobacter sp. OAE881 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.41 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Rhodanobacter denitrificans MT42 0.36 LRK55_RS12420 ATP-dependent RNA helicase HrpA 0.40 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS12715 ATP-dependent RNA helicase HrpA 0.40 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_02155 hrpA ATP-dependent RNA helicase HrpA 0.39 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Bifidobacterium breve UCC2003 0.32 BBR_RS17010 DUF3418 domain-containing protein 0.16 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA 0.63 11

Not shown: 1 genomes with orthologs for PP_4546 only; 33 genomes with orthologs for PP_1994 only