Conservation of cofitness between PP_4902 and PP_0719 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4902 Oligoribonuclease 1.0 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.35 20
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_08695 oligoribonuclease 0.94 AO356_16450 GTP-binding protein — —
Pseudomonas sp. RS175 0.92 PFR28_05113 Oligoribonuclease 0.95 PFR28_03664 Ribosome-binding ATPase YchF — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_13105 oligoribonuclease 0.93 AO353_14740 GTP-binding protein — —
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_162 3'-to-5' oligoribonuclease (orn) 0.94 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas simiae WCS417 0.90 PS417_02450 oligoribonuclease 0.93 PS417_03560 GTP-binding protein — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS02530 oligoribonuclease 0.92 PFLU_RS03610 redox-regulated ATPase YchF — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1420 3'-to-5' oligoribonuclease (orn) 0.94 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS02530 oligoribonuclease 0.92 PFLU_RS03610 redox-regulated ATPase YchF — —
Pseudomonas stutzeri RCH2 0.88 Psest_0500 Oligoribonuclease (3'->5' exoribonuclease) 0.91 Psest_1103 GTP-binding protein YchF — —
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0564 Exonuclease 0.94 Psyr_0941 Conserved hypothetical protein 92 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0564 Exonuclease 0.94 Psyr_0941 Conserved hypothetical protein 92 — —
Pseudomonas sp. S08-1 0.82 OH686_09505 3'-to-5' oligoribonuclease (orn) 0.94 OH686_07965 GTP-binding and nucleic acid-binding protein YchF low > 80
Escherichia coli BL21 0.69 ECD_04032 oligoribonuclease 0.72 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated — —
Dickeya dadantii 3937 0.69 DDA3937_RS18940 oligoribonuclease 0.72 DDA3937_RS11035 redox-regulated ATPase YchF — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS24180 oligoribonuclease 0.72 ECOLIN_RS07280 redox-regulated ATPase YchF — —
Enterobacter sp. TBS_079 0.69 MPMX20_00443 Oligoribonuclease 0.70 MPMX20_02645 Ribosome-binding ATPase YchF — —
Escherichia coli ECOR38 0.69 HEPCGN_10540 orn oligoribonuclease 0.72 HEPCGN_24875 ychF redox-regulated ATPase YchF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03880 Oligoribonuclease 0.72 OHPLBJKB_02484 Ribosome-binding ATPase YchF — —
Escherichia coli BW25113 0.69 b4162 yjeR orf, hypothetical protein (VIMSS) 0.72 b1203 ychF translation-associated GTPase (NCBI) — —
Escherichia fergusonii Becca 0.69 EFB2_04373 Oligoribonuclease 0.72 EFB2_02724 Ribosome-binding ATPase YchF — —
Escherichia coli ECOR27 0.69 NOLOHH_04575 orn oligoribonuclease 0.72 NOLOHH_20650 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC62 0.69 BNILDI_06915 orn oligoribonuclease 0.72 BNILDI_18805 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC101 0.69 MCAODC_02825 orn oligoribonuclease 0.72 MCAODC_21850 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC99 0.69 KEDOAH_15850 orn oligoribonuclease 0.72 KEDOAH_25405 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC98 0.69 JDDGAC_15950 orn oligoribonuclease 0.72 JDDGAC_06165 ychF redox-regulated ATPase YchF — —
Serratia liquefaciens MT49 0.69 IAI46_01575 oligoribonuclease 0.70 IAI46_10240 redox-regulated ATPase YchF — —
Escherichia coli ECRC101 0.69 OKFHMN_12315 orn oligoribonuclease 0.72 OKFHMN_28410 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC102 0.69 NIAGMN_10160 orn oligoribonuclease 0.72 NIAGMN_27825 ychF redox-regulated ATPase YchF — —
Dickeya dianthicola ME23 0.69 DZA65_RS20150 oligoribonuclease 0.72 DZA65_RS11435 redox-regulated ATPase YchF — —
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3360 Oligoribonuclease (3'->5' exoribonuclease) 0.70 EX28DRAFT_0821 GTP-binding protein YchF — —
Dickeya dianthicola 67-19 0.69 HGI48_RS19035 oligoribonuclease 0.72 HGI48_RS10975 redox-regulated ATPase YchF — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_01765 oligoribonuclease 0.69 CSW01_10875 redox-regulated ATPase YchF — —
Shewanella oneidensis MR-1 0.68 SO0592 orn oligoribonuclease (NCBI ptt file) 0.73 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) — —
Klebsiella michiganensis M5al 0.68 BWI76_RS02480 oligoribonuclease 0.70 BWI76_RS17485 GTP-binding protein YchF — —
Alteromonas macleodii MIT1002 0.68 MIT1002_00496 Oligoribonuclease 0.71 MIT1002_01504 Ribosome-binding ATPase YchF — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS02415 oligoribonuclease 0.72 HER17_RS10445 redox-regulated ATPase YchF — —
Pantoea sp. MT58 0.68 IAI47_02540 oligoribonuclease 0.73 IAI47_11310 redox-regulated ATPase YchF — —
Shewanella sp. ANA-3 0.68 Shewana3_0590 oligoribonuclease (RefSeq) 0.73 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1946 Oligoribonuclease (3'->5' exoribonuclease) 0.70 B158DRAFT_2052 GTP-binding protein YchF — —
Marinobacter adhaerens HP15 0.67 HP15_2506 oligoribonuclease 0.78 HP15_704 translation-associated GTPase — —
Rahnella sp. WP5 0.67 EX31_RS08865 oligoribonuclease 0.70 EX31_RS07380 redox-regulated ATPase YchF — —
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS07210 oligoribonuclease 0.63 HSERO_RS20405 GTP-binding protein YchF — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF1989 '3'-to-5' oligoribonuclease (orn)' transl_table=11 0.73 GFF2784 GTP-binding and nucleic acid-binding protein YchF — —
Acinetobacter radioresistens SK82 0.65 MPMX26_02630 Oligoribonuclease 0.77 MPMX26_01861 Ribosome-binding ATPase YchF — —
Erwinia tracheiphila SCR3 0.65 LU632_RS01950 orn oligoribonuclease 0.74 LU632_RS13950 ychF redox-regulated ATPase YchF — —
Shewanella amazonensis SB2B 0.64 Sama_3032 oligoribonuclease (RefSeq) 0.72 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_0559 oligoribonuclease (RefSeq) 0.71 Shew_2919 translation-associated GTPase (RefSeq) — —
Paraburkholderia graminis OAS925 0.64 ABIE53_003119 oligoribonuclease 0.68 ABIE53_003650 GTP-binding protein YchF — —
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2410.1 3'-to-5' oligoribonuclease (orn) 0.69 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS14770 oligoribonuclease 0.67 RR42_RS18365 GTP-binding protein — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS04255 oligoribonuclease 0.67 QEN71_RS27600 redox-regulated ATPase YchF — —
Lysobacter sp. OAE881 0.62 ABIE51_RS09510 oligoribonuclease 0.70 ABIE51_RS05745 redox-regulated ATPase YchF — —
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04301 oligoribonuclease 0.68 H281DRAFT_05705 hypothetical protein — —
Dechlorosoma suillum PS 0.62 Dsui_3222 oligoribonuclease (3'->5' exoribonuclease) 0.65 Dsui_1039 GTP-binding protein YchF — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14720 oligoribonuclease 0.68 BPHYT_RS17445 GTP-binding protein YchF — —
Rhodanobacter denitrificans MT42 0.61 LRK55_RS17690 oligoribonuclease 0.67 LRK55_RS03425 redox-regulated ATPase YchF — —
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_07465 orn oligoribonuclease 0.66 OKGIIK_10565 Ribosome-binding ATPase YchF — —
Acidovorax sp. GW101-3H11 0.60 Ac3H11_1677 3'-to-5' oligoribonuclease (orn) 0.63 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF — —
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS17470 oligoribonuclease 0.67 LRK54_RS03675 redox-regulated ATPase YchF — —
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS01910 oligoribonuclease 0.71 ABZR86_RS22010 redox-regulated ATPase YchF — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS06995 oligoribonuclease 0.66 ABCV34_RS09215 redox-regulated ATPase YchF — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5731 3'-to-5' oligoribonuclease (orn) 0.66 GFF630 GTP-binding and nucleic acid-binding protein YchF low > 90
Variovorax sp. SCN45 0.56 GFF3960 3'-to-5' oligoribonuclease (orn) 0.64 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.74 30
Variovorax sp. OAS795 0.55 ABID97_RS08790 oligoribonuclease 0.63 ABID97_RS24750 redox-regulated ATPase YchF 0.58 9
Bifidobacterium breve UCC2003 0.34 BBR_RS18035 oligoribonuclease 0.46 BBR_RS14650 redox-regulated ATPase YchF — —

Not shown: 1 genomes with orthologs for PP_4902 only; 37 genomes with orthologs for PP_0719 only