Conservation of cofitness between PP_4902 and PP_0547 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4902 Oligoribonuclease 1.0 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.37 19
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_08695 oligoribonuclease 0.90 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3622 3'-to-5' oligoribonuclease (orn) 0.90 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas sp. RS175 0.92 PFR28_05113 Oligoribonuclease 0.90 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_13105 oligoribonuclease 0.89 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_162 3'-to-5' oligoribonuclease (orn) 0.90 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS02530 oligoribonuclease 0.91 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1420 3'-to-5' oligoribonuclease (orn) 0.90 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS02530 oligoribonuclease 0.91 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas simiae WCS417 0.90 PS417_02450 oligoribonuclease 0.91 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas stutzeri RCH2 0.88 Psest_0500 Oligoribonuclease (3'->5' exoribonuclease) 0.86 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0564 Exonuclease 0.87 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0564 Exonuclease 0.87 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas sp. S08-1 0.82 OH686_09505 3'-to-5' oligoribonuclease (orn) 0.86 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Escherichia coli BL21 0.69 ECD_04032 oligoribonuclease 0.62 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03880 Oligoribonuclease 0.61 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Dickeya dadantii 3937 0.69 DDA3937_RS18940 oligoribonuclease 0.61 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Escherichia coli ECRC62 0.69 BNILDI_06915 orn oligoribonuclease 0.62 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Enterobacter sp. TBS_079 0.69 MPMX20_00443 Oligoribonuclease 0.61 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Escherichia fergusonii Becca 0.69 EFB2_04373 Oligoribonuclease 0.62 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS24180 oligoribonuclease 0.62 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Escherichia coli BW25113 0.69 b4162 yjeR orf, hypothetical protein (VIMSS) 0.61 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) — —
Escherichia coli ECOR38 0.69 HEPCGN_10540 orn oligoribonuclease 0.62 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECOR27 0.69 NOLOHH_04575 orn oligoribonuclease 0.62 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC102 0.69 NIAGMN_10160 orn oligoribonuclease 0.61 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC98 0.69 JDDGAC_15950 orn oligoribonuclease 0.62 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC99 0.69 KEDOAH_15850 orn oligoribonuclease 0.62 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC101 0.69 OKFHMN_12315 orn oligoribonuclease 0.62 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC101 0.69 MCAODC_02825 orn oligoribonuclease 0.62 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Serratia liquefaciens MT49 0.69 IAI46_01575 oligoribonuclease 0.62 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Dickeya dianthicola 67-19 0.69 HGI48_RS19035 oligoribonuclease 0.61 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_01765 oligoribonuclease 0.66 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Dickeya dianthicola ME23 0.69 DZA65_RS20150 oligoribonuclease 0.60 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3360 Oligoribonuclease (3'->5' exoribonuclease) 0.61 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Shewanella oneidensis MR-1 0.68 SO0592 orn oligoribonuclease (NCBI ptt file) 0.64 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS02415 oligoribonuclease 0.61 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Klebsiella michiganensis M5al 0.68 BWI76_RS02480 oligoribonuclease 0.62 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Alteromonas macleodii MIT1002 0.68 MIT1002_00496 Oligoribonuclease 0.66 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pantoea sp. MT58 0.68 IAI47_02540 oligoribonuclease 0.60 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Shewanella sp. ANA-3 0.68 Shewana3_0590 oligoribonuclease (RefSeq) 0.64 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1946 Oligoribonuclease (3'->5' exoribonuclease) 0.57 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Rahnella sp. WP5 0.67 EX31_RS08865 oligoribonuclease 0.59 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Marinobacter adhaerens HP15 0.67 HP15_2506 oligoribonuclease 0.61 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS07210 oligoribonuclease 0.61 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF1989 '3'-to-5' oligoribonuclease (orn)' transl_table=11 0.61 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Acinetobacter radioresistens SK82 0.65 MPMX26_02630 Oligoribonuclease 0.62 MPMX26_03053 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Erwinia tracheiphila SCR3 0.65 LU632_RS01950 orn oligoribonuclease 0.61 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Shewanella amazonensis SB2B 0.64 Sama_3032 oligoribonuclease (RefSeq) 0.65 Sama_0769 UDP-N-acetylmuramate (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_0559 oligoribonuclease (RefSeq) 0.65 Shew_3144 UDP-N-acetylmuramate (RefSeq) — —
Paraburkholderia graminis OAS925 0.64 ABIE53_003119 oligoribonuclease 0.60 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2410.1 3'-to-5' oligoribonuclease (orn) 0.52 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS04255 oligoribonuclease 0.60 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS14770 oligoribonuclease 0.61 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Lysobacter sp. OAE881 0.62 ABIE51_RS09510 oligoribonuclease 0.50 ABIE51_RS17450 Mur ligase family protein — —
Dechlorosoma suillum PS 0.62 Dsui_3222 oligoribonuclease (3'->5' exoribonuclease) 0.62 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04301 oligoribonuclease 0.59 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14720 oligoribonuclease 0.59 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Rhodanobacter denitrificans MT42 0.61 LRK55_RS17690 oligoribonuclease 0.55 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_07465 orn oligoribonuclease 0.55 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase — —
Acidovorax sp. GW101-3H11 0.60 Ac3H11_1677 3'-to-5' oligoribonuclease (orn) 0.47 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 79
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS17470 oligoribonuclease 0.55 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS01910 oligoribonuclease 0.55 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS06995 oligoribonuclease 0.56 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF5731 3'-to-5' oligoribonuclease (orn) 0.50 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Variovorax sp. SCN45 0.56 GFF3960 3'-to-5' oligoribonuclease (orn) 0.55 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) low > 127
Variovorax sp. OAS795 0.55 ABID97_RS08790 oligoribonuclease 0.54 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 91

Not shown: 1 genomes with orthologs for PP_4902 only; 7 genomes with orthologs for PP_0547 only