Conservation of cofitness between PP_4098 and PP_0368 in Pseudomonas putida KT2440

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4098 UvrABC system protein C 1.0 PP_0368 putative Acyl-CoA dehydrogenase 0.23 17
Pseudomonas simiae WCS417 0.87 PS417_10725 excinuclease ABC subunit C 0.94 PS417_25975 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 88
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_00350 excinuclease ABC subunit C 0.95 AO356_14165 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 104
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.94 PFLU_RS27620 acyl-CoA dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.94 PFLU_RS27620 acyl-CoA dehydrogenase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2896 Excinuclease ABC subunit C 0.91 Psyr_4681 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2896 Excinuclease ABC subunit C 0.91 Psyr_4681 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_5618 Excinuclease ABC subunit C 0.95 Pf1N1B4_2493 Acyl-CoA dehydrogenase (EC 1.3.8.7) 0.28 42
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2886 Excinuclease ABC subunit C 0.94 PfGW456L13_1153 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 87
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_21835 excinuclease ABC subunit C 0.94 AO353_07495 acyl-CoA dehydrogenase low > 101
Pseudomonas sp. RS175 0.84 PFR28_01411 UvrABC system protein C 0.94 PFR28_04096 3-methylmercaptopropionyl-CoA dehydrogenase low > 88
Pseudomonas stutzeri RCH2 0.84 Psest_2259 excinuclease ABC, C subunit 0.91 Psest_0417 Acyl-CoA dehydrogenases low > 67
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_2021 Excinuclease ABC subunit C 0.95 Pf6N2E2_4766 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 103
Pseudomonas sp. S08-1 0.82 OH686_00340 excinuclease ABC subunit C 0.93 OH686_10320 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] low > 80
Marinobacter adhaerens HP15 0.56 HP15_1568 excinuclease ABC subunit C 0.77 HP15_2479 acyl-CoA dehydrogenase family protein low > 73
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS00380 excinuclease ABC subunit UvrC 0.51 LRK54_RS12455 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.55 LRK55_RS00120 excinuclease ABC subunit UvrC 0.51 LRK55_RS12195 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 63
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC 0.50 OKGIIK_02065 acyl-CoA dehydrogenase low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.51 ABZR86_RS19440 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 74
Shewanella sp. ANA-3 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) 0.47 Shewana3_2552 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.47 SO2768 acyl-CoA dehydrogenase family protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.51 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.46 Shew_2164 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.49 MPMX26_00228 UvrABC system protein C 0.68 MPMX26_02628 3-methylmercaptopropionyl-CoA dehydrogenase low > 36
Alteromonas macleodii MIT1002 0.49 MIT1002_02153 Excinuclease ABC subunit C 0.61 MIT1002_01752 Acyl-CoA dehydrogenase 0.59 28
Lysobacter sp. OAE881 0.47 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.55 ABIE51_RS15170 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 62
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.54 Xcc-8004.2104.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 74
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09690 excinuclease ABC subunit C 0.57 HSERO_RS01255 acyl-CoA dehydrogenase low > 78
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS14000 excinuclease ABC subunit C 0.61 RR42_RS02505 acyl-CoA dehydrogenase low > 128
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.59 ABZR87_RS07475 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 80
Ralstonia solanacearum GMI1000 0.44 RS_RS05305 excinuclease ABC subunit UvrC 0.59 RS_RS02345 acyl-CoA dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS18935 excinuclease ABC subunit UvrC 0.59 RPSI07_RS21695 acyl-CoA dehydrogenase low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS14525 excinuclease ABC subunit UvrC 0.59 RALBFv3_RS11515 acyl-CoA dehydrogenase low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS11990 excinuclease ABC subunit UvrC 0.59 UW163_RS02070 acyl-CoA dehydrogenase — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS06980 excinuclease ABC subunit UvrC 0.81 ABCV34_RS08075 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 48
Variovorax sp. OAS795 0.42 ABID97_RS10635 excinuclease ABC subunit UvrC 0.54 ABID97_RS05855 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 91
Variovorax sp. SCN45 0.42 GFF2859 Excinuclease ABC subunit C 0.54 GFF4610 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF3847 Excinuclease ABC subunit C 0.55 GFF412 Acyl-CoA dehydrogenase (EC 1.3.8.7) — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_373 Excinuclease ABC subunit C 0.53 Ac3H11_1912 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 79
Rhodopseudomonas palustris CGA009 0.39 TX73_006010 excinuclease ABC subunit UvrC 0.51 TX73_004210 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 86
Phaeobacter inhibens DSM 17395 0.39 PGA1_c02880 uvrABC system protein C 0.49 PGA1_c12080 putative acyl-CoA dehydrogenase low > 62
Azospirillum brasilense Sp245 0.39 AZOBR_RS08965 excinuclease ABC subunit C 0.54 AZOBR_RS20230 acyl-CoA dehydrogenase low > 97
Dinoroseobacter shibae DFL-12 0.39 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.49 Dshi_0839 acyl-CoA dehydrogenase domain protein (RefSeq) low > 64
Azospirillum sp. SherDot2 0.38 MPMX19_01070 UvrABC system protein C 0.53 MPMX19_04899 3-methylmercaptopropionyl-CoA dehydrogenase low > 112
Agrobacterium fabrum C58 0.37 Atu1129 excinuclease ABC chain C 0.51 Atu0501 acyl-CoA dehydrogenase low > 89
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3186 Excinuclease ABC subunit C 0.49 Ga0059261_3633 Acyl-CoA dehydrogenases low > 68
Sinorhizobium meliloti 1021 0.36 SMc00602 excinuclease ABC subunit C 0.52 SMc02229 acyl-CoA dehydrogenase low > 103
Magnetospirillum magneticum AMB-1 0.36 AMB_RS19240 UvrABC system protein C 0.36 AMB_RS13255 acyl-CoA dehydrogenase low > 64
Rhizobium sp. OAE497 0.35 ABIE40_RS06500 excinuclease ABC subunit UvrC 0.52 ABIE40_RS02580 acyl-CoA dehydrogenase C-terminal domain-containing protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS01670 excinuclease ABC subunit UvrC 0.48 A4249_RS00375 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 48
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02975 excinuclease ABC subunit C 0.47 CCNA_00078 acyl-CoA dehydrogenase low > 67
Caulobacter crescentus NA1000 0.33 CCNA_02975 excinuclease ABC subunit C 0.47 CCNA_00078 acyl-CoA dehydrogenase low > 66
Mycobacterium tuberculosis H37Rv 0.28 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC 0.22 Rv0244c Probable acyl-CoA dehydrogenase FadE5 — —

Not shown: 44 genomes with orthologs for PP_4098 only; 5 genomes with orthologs for PP_0368 only