Conservation of cofitness between PP_4546 and PP_0123 in Pseudomonas putida KT2440

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4546 ATP-dependent helicase HrpA 1.0 PP_0123 DNA polymerase I, 5 0.49 2
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas simiae WCS417 0.85 PS417_20575 ATP-dependent helicase HrpA 0.79 PS417_00405 DNA polymerase I low > 88
Pseudomonas sp. RS175 0.85 PFR28_00739 hypothetical protein 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_18225 ATP-dependent RNA helicase HrpA 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_04280 ATP-dependent RNA helicase HrpA 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.77 OH686_12215 DNA polymerase I low > 80
Pseudomonas stutzeri RCH2 0.78 Psest_1339 ATP-dependent helicase HrpA 0.77 Psest_4219 DNA polymerase I low > 67
Marinobacter adhaerens HP15 0.48 HP15_1863 RNA helicase, ATP-dependent DEAH box, HrpA type 0.56 HP15_293 DNA polymerase I low > 73
Shewanella loihica PV-4 0.48 Shew_1767 ATP-dependent helicase HrpA (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Shewanella sp. ANA-3 0.48 Shewana3_1897 ATP-dependent helicase HrpA (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Dickeya dadantii 3937 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.59 DDA3937_RS00105 DNA polymerase I — —
Serratia liquefaciens MT49 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA 0.60 IAI46_24985 DNA polymerase I low > 86
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_06950 ATP-dependent RNA helicase HrpA 0.61 CSW01_00560 DNA polymerase I 0.63 40
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.61 HER17_RS21470 DNA polymerase I — —
Dickeya dianthicola ME23 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.59 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.59 HGI48_RS21260 DNA polymerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli Nissle 1917 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia fergusonii Becca 0.47 EFB2_02565 hypothetical protein 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC101 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC98 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC99 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC102 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC101 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli BL21 0.47 ECD_01368 putative ATP-dependent helicase 0.61 ECD_03749 5 — —
Shewanella amazonensis SB2B 0.47 Sama_1619 ATP-dependent helicase HrpA (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Escherichia coli ECOR38 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECOR27 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC62 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.61 BNILDI_05250 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1357 RNA helicase HrpA 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli BW25113 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02301 hypothetical protein 0.61 OHPLBJKB_04189 DNA polymerase I — —
Enterobacter sp. TBS_079 0.47 MPMX20_02189 hypothetical protein 0.60 MPMX20_04601 DNA polymerase I low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.59 BWI76_RS00355 DNA polymerase I low > 92
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.60 IAI47_00430 DNA polymerase I low > 76
Rahnella sp. WP5 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.61 EX31_RS15905 DNA polymerase I low > 89
Alteromonas macleodii MIT1002 0.45 MIT1002_01685 ATP-dependent RNA helicase HrpB 0.62 MIT1002_00014 DNA polymerase I low > 70
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.61 LU632_RS23870 polA DNA polymerase I — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13030 ATP-dependent helicase 0.52 RR42_RS15050 DNA polymerase I low > 128
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11020 ATP-dependent RNA helicase HrpA 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17865 ATP-dependent RNA helicase HrpA 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum GMI1000 0.41 RS_RS06270 ATP-dependent RNA helicase HrpA 0.51 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum UW163 0.41 UW163_RS12950 ATP-dependent RNA helicase HrpA 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15490 ATP-dependent RNA helicase HrpA 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Dechlorosoma suillum PS 0.41 Dsui_1373 ATP-dependent helicase HrpA 0.52 Dsui_0459 DNA polymerase I low > 51
Castellaniella sp019104865 MT123 0.40 ABCV34_RS02420 ATP-dependent RNA helicase HrpA 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Paraburkholderia graminis OAS925 0.40 ABIE53_002813 ATP-dependent helicase HrpA 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_1779 ATP-dependent helicase HrpA 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS17315 ATP-dependent helicase 0.53 HSERO_RS02260 DNA polymerase I low > 78
Variovorax sp. OAS795 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA 0.48 ABID97_RS09180 DNA polymerase I low > 91
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19720 ATP-dependent RNA helicase HrpA 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Acidovorax sp. GW101-3H11 0.38 Ac3H11_896 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. SCN45 0.38 GFF247 ATP-dependent helicase HrpA 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4301 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.48 MPMX26_00574 DNA polymerase I low > 36
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS05625 ATP-dependent RNA helicase HrpA 0.52 QEN71_RS17885 DNA polymerase I — —
Lysobacter sp. OAE881 0.37 ABIE51_RS05155 ATP-dependent RNA helicase HrpA 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Rhodanobacter denitrificans MT42 0.36 LRK55_RS12420 ATP-dependent RNA helicase HrpA 0.56 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS12715 ATP-dependent RNA helicase HrpA 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_02155 hrpA ATP-dependent RNA helicase HrpA 0.56 OKGIIK_16785 polA DNA polymerase I low > 52

Not shown: 1 genomes with orthologs for PP_4546 only; 30 genomes with orthologs for PP_0123 only