Conservation of cofitness between PFR28_03973 and PFR28_01119 in Pseudomonas sp. RS175

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas sp. RS175 1.0 PFR28_03973 Inner membrane transport protein YajR 1.0 PFR28_01119 Beta-hexosaminidase 0.31 19
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_2612 Putative transport protein 0.92 Pf1N1B4_3912 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) — —
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_1284 Putative transport protein 0.92 PfGW456L13_4031 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 87
Pseudomonas sp. DMC3 0.94 GFF3793 Inner membrane transport protein YajR 0.92 GFF1280 Beta-hexosaminidase 0.47 85
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_06850 MFS transporter 0.92 AO353_00455 beta-hexosaminidase low > 101
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_14790 MFS transporter 0.90 AO356_02285 beta-hexosaminidase 0.37 87
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_4889 Putative transport protein 0.90 Pf6N2E2_2281 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 103
Pseudomonas simiae WCS417 0.91 PS417_25390 MFS transporter 0.90 PS417_07620 beta-hexosaminidase low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS27020 MFS transporter 0.91 PFLU_RS07695 beta-N-acetylhexosaminidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS27020 MFS transporter 0.91 PFLU_RS07695 beta-N-acetylhexosaminidase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4519 General substrate transporter:Major facilitator superfamily 0.84 Psyr_3281 Glycoside hydrolase, family 3, N-terminal — —
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4519 General substrate transporter:Major facilitator superfamily 0.84 Psyr_3281 Glycoside hydrolase, family 3, N-terminal low > 86
Pseudomonas sp. SVBP6 0.86 COO64_RS16070 MFS transporter 0.84 COO64_RS09445 nagZ beta-N-acetylhexosaminidase low > 93
Pseudomonas sp. BP01 0.84 JOY50_RS20300 MFS transporter 0.84 JOY50_RS25085 nagZ beta-N-acetylhexosaminidase low > 84
Pseudomonas putida KT2440 0.83 PP_0484 transporter of an unknown substrate 0.85 PP_2145 beta-N-acetylglucosaminidase low > 96
Pseudomonas sp. S08-1 0.75 OH686_15500 Inner membrane transport protein YajR 0.83 OH686_21975 beta-N-acetylglucosaminidase 0.71 13
Pseudomonas aeruginosa PA14 0.71 IKLFDK_21790 MFS transporter 0.83 IKLFDK_15290 beta-N-acetylhexosaminidase low > 101
Pseudomonas stutzeri RCH2 0.70 Psest_3575 Arabinose efflux permease 0.73 Psest_2643 Beta-glucosidase-related glycosidases low > 67
Serratia liquefaciens MT49 0.56 IAI46_04960 MFS transporter 0.43 IAI46_09900 beta-N-acetylhexosaminidase low > 86
Pectobacterium carotovorum WPP14 0.55 HER17_RS15900 MFS transporter 0.45 HER17_RS08725 beta-N-acetylhexosaminidase low > 75
Rahnella sp. WP5 0.55 EX31_RS22195 MFS transporter 0.42 EX31_RS24500 beta-N-acetylhexosaminidase low > 89
Klebsiella michiganensis M5al 0.54 BWI76_RS06415 MFS transporter 0.43 BWI76_RS11165 beta-N-acetylhexosaminidase — —
Pantoea sp. MT58 0.54 IAI47_14705 MFS transporter 0.41 IAI47_11995 beta-N-acetylhexosaminidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4338 Putative transport protein 0.42 GFF3390 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 78
Dickeya dadantii 3937 0.53 DDA3937_RS05575 MFS transporter 0.42 DDA3937_RS13050 beta-N-acetylhexosaminidase low > 74
Erwinia amylovora T8 0.53 OLJFJH_18030 MFS transporter 0.45 OLJFJH_15465 beta-N-acetylhexosaminidase low > 58
Erwinia tracheiphila SCR3 0.52 LU632_RS18400 MFS transporter 0.44 LU632_RS14755 nagZ beta-N-acetylhexosaminidase low > 74
Escherichia coli Nissle 1917 0.52 ECOLIN_RS02570 MFS transporter 0.43 ECOLIN_RS06390 beta-N-acetylhexosaminidase low > 55
Enterobacter asburiae PDN3 0.51 EX28DRAFT_2544 Arabinose efflux permease 0.42 EX28DRAFT_1823 Beta-glucosidase-related glycosidases low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_03249 Inner membrane transport protein YajR 0.43 OHPLBJKB_02559 Beta-hexosaminidase low > 73
Escherichia coli ECOR38 0.51 HEPCGN_07015 yajR Inner membrane transport protein YajR 0.43 HEPCGN_23980 nagZ beta-N-acetylhexosaminidase low > 87
Escherichia coli BL21 0.51 ECD_00375 putative transporter 0.43 ECD_01103 beta N-acetyl-glucosaminidase low > 61
Escherichia coli BW25113 0.51 b0427 yajR putative transport protein (VIMSS) 0.43 b1107 nagZ beta-hexosaminidase (NCBI) low > 76
Escherichia coli ECOR27 0.51 NOLOHH_01335 yajR Inner membrane transport protein YajR 0.43 NOLOHH_21035 nagZ beta-N-acetylhexosaminidase low > 75
Escherichia fergusonii Becca 0.51 EFB2_03630 Inner membrane transport protein YajR 0.43 EFB2_02868 Beta-hexosaminidase low > 86
Enterobacter sp. TBS_079 0.51 MPMX20_01018 Inner membrane transport protein YajR 0.42 MPMX20_01788 Beta-hexosaminidase low > 85
Escherichia coli ECRC62 0.51 BNILDI_22750 yajR Inner membrane transport protein YajR 0.43 BNILDI_19195 nagZ beta-N-acetylhexosaminidase low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS05635 MFS transporter 0.42 HGI48_RS13115 beta-N-acetylhexosaminidase low > 71
Escherichia coli ECRC99 0.51 KEDOAH_19580 yajR Inner membrane transport protein YajR 0.43 KEDOAH_24250 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC98 0.51 JDDGAC_12040 yajR Inner membrane transport protein YajR 0.43 JDDGAC_07165 nagZ beta-N-acetylhexosaminidase low > 86
Escherichia coli ECRC101 0.51 MCAODC_27610 yajR Inner membrane transport protein YajR 0.43 MCAODC_22865 nagZ beta-N-acetylhexosaminidase low > 87
Dickeya dianthicola ME23 0.51 DZA65_RS05960 MFS transporter 0.42 DZA65_RS13585 beta-N-acetylhexosaminidase low > 75
Escherichia coli ECRC102 0.51 NIAGMN_06440 yajR Inner membrane transport protein YajR 0.43 NIAGMN_24325 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC100 0.51 OKFHMN_08385 yajR Inner membrane transport protein YajR 0.43 OKFHMN_03505 nagZ beta-N-acetylhexosaminidase low > 80
Shewanella amazonensis SB2B 0.43 Sama_0515 transporter, putative (RefSeq) 0.42 Sama_1326 beta-hexosaminidase (RefSeq) low > 62
Methylophilus sp. DMC18 0.42 GFF2007 Inner membrane transport protein YajR 0.47 GFF924 Beta-hexosaminidase low > 43
Shewanella sp. ANA-3 0.40 Shewana3_3591 major facilitator transporter (RefSeq) 0.43 Shewana3_2293 beta-hexosaminidase (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_0534 major facilitator transporter (RefSeq) 0.44 Shew_1626 beta-hexosaminidase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.40 SO4029 transporter, putative (NCBI ptt file) 0.43 SO2250 nagZ beta-hexosaminidase (NCBI ptt file) low > 76
Dechlorosoma suillum PS 0.38 Dsui_3480 arabinose efflux permease family protein 0.43 Dsui_2465 beta-glucosidase-like glycosyl hydrolase — —
Ralstonia solanacearum GMI1000 0.37 RS_RS02085 MFS transporter 0.44 RS_RS05290 beta-N-acetylhexosaminidase low > 80
Acinetobacter radioresistens SK82 0.37 MPMX26_02889 Inner membrane transport protein YajR 0.54 MPMX26_00420 Beta-hexosaminidase low > 36
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS11240 MFS transporter 0.43 RALBFv3_RS14510 beta-N-acetylhexosaminidase 0.51 26
Ralstonia solanacearum UW163 0.37 UW163_RS02340 MFS transporter 0.43 UW163_RS11975 beta-N-acetylhexosaminidase — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22060 MFS transporter 0.43 RPSI07_RS18950 beta-N-acetylhexosaminidase low > 81
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS07125 MFS transporter 0.43 ABZR87_RS10230 beta-N-acetylhexosaminidase low > 80
Paraburkholderia graminis OAS925 0.36 ABIE53_000733 MFS family permease 0.45 ABIE53_003031 beta-N-acetylhexosaminidase low > 113
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01830 MFS transporter 0.42 QEN71_RS04635 beta-N-acetylhexosaminidase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_01912 Predicted arabinose efflux permease, MFS family 0.45 H281DRAFT_04367 beta-N-acetylhexosaminidase — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS19800 membrane protein 0.43 HSERO_RS09685 beta-hexosaminidase — —
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS02975 membrane protein 0.46 BPHYT_RS14345 beta-hexosaminidase low > 109
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS02150 membrane protein 0.43 RR42_RS14015 beta-hexosaminidase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2754 putative transport protein 0.39 GFF3351 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 90
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0886 Arabinose efflux permease 0.46 B158DRAFT_1585 Beta-glucosidase-related glycosidases low > 40
Castellaniella sp019104865 MT123 0.29 ABCV34_RS12720 MFS transporter 0.40 ABCV34_RS06985 beta-N-acetylhexosaminidase — —
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4384 putative transport protein 0.42 Ac3H11_1561 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 79
Alteromonas macleodii MIT1002 0.29 MIT1002_00180 Inner membrane transport protein YajR 0.37 MIT1002_01643 Beta-hexosaminidase low > 70
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS04790 MFS transporter 0.36 LRK53_RS11930 beta-N-acetylhexosaminidase — —
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_01605 putative arabinose efflux permease, MFS family 0.34 OKGIIK_07830 nagZ beta-N-acetylhexosaminidase — —
Rhodanobacter denitrificans MT42 0.25 LRK55_RS05000 MFS transporter 0.36 LRK55_RS16725 beta-N-acetylhexosaminidase — —
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS05220 MFS transporter 0.36 LRK54_RS17010 beta-N-acetylhexosaminidase — —

Not shown: 1 genomes with orthologs for PFR28_03973 only; 15 genomes with orthologs for PFR28_01119 only