Conservation of cofitness between HSERO_RS11215 and HSERO_RS17780 in Herbaspirillum seropedicae SmR1

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS11215 methionine sulfoxide reductase B 1.0 HSERO_RS17780 50S rRNA methyltransferase 0.31 11
Castellaniella sp019104865 MT123 0.70 ABCV34_RS08520 peptide-methionine (R)-S-oxide reductase MsrB 0.54 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 48
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS09545 peptide methionine sulfoxide reductase 0.75 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H low > 109
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS12635 peptide-methionine (R)-S-oxide reductase MsrB 0.77 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 80
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00913 peptide-methionine (R)-S-oxide reductase 0.76 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase low > 103
Paraburkholderia graminis OAS925 0.68 ABIE53_002148 peptide-methionine (R)-S-oxide reductase 0.77 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase — —
Ralstonia solanacearum GMI1000 0.68 RS_RS08825 peptide-methionine (R)-S-oxide reductase 0.73 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS01185 peptide-methionine (R)-S-oxide reductase 0.74 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 76
Ralstonia solanacearum UW163 0.67 UW163_RS14495 peptide-methionine (R)-S-oxide reductase 0.74 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Ralstonia solanacearum PSI07 0.66 RPSI07_RS16290 peptide-methionine (R)-S-oxide reductase 0.73 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 81
Lysobacter sp. OAE881 0.66 ABIE51_RS05405 peptide-methionine (R)-S-oxide reductase MsrB 0.41 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 62
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS11165 methionine sulfoxide reductase B 0.75 RR42_RS04710 50S rRNA methyltransferase low > 128
Agrobacterium fabrum C58 0.64 Atu0908 transcriptional regulator 0.27 Atu2776 hypothetical protein low > 89
Rhizobium sp. OAE497 0.64 ABIE40_RS04980 peptide-methionine (R)-S-oxide reductase MsrB 0.30 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 107
Magnetospirillum magneticum AMB-1 0.64 AMB_RS20830 peptide-methionine (R)-S-oxide reductase 0.37 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 64
Sinorhizobium meliloti 1021 0.62 SMc00117 hypothetical protein 0.31 SMc03781 rRNA large subunit methyltransferase low > 103
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_19155 peptide methionine sulfoxide reductase 0.40 AO353_06480 50S rRNA methyltransferase low > 101
Acinetobacter radioresistens SK82 0.60 MPMX26_01870 Peptide methionine sulfoxide reductase MsrB 0.37 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H low > 36
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_2445 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.40 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH low > 103
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_260 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.40 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH — —
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS11250 peptide-methionine (R)-S-oxide reductase MsrB 0.44 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 74
Acidovorax sp. GW101-3H11 0.60 Ac3H11_2535 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.56 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH low > 79
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_03085 peptide methionine sulfoxide reductase 0.40 AO356_15305 50S rRNA methyltransferase low > 104
Pseudomonas putida KT2440 0.59 PP_1873 Peptide methionine sulfoxide reductase MsrB 0.40 PP_4808 23S rRNA m3psi1915 methyltransferase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_3614 Protein of unknown function DUF25 0.40 Psyr_4366 Protein of unknown function DUF163 low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_3614 Protein of unknown function DUF25 0.40 Psyr_4366 Protein of unknown function DUF163 — —
Variovorax sp. SCN45 0.59 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) 0.55 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) low > 127
Variovorax sp. OAS795 0.59 ABID97_RS15695 peptide-methionine (R)-S-oxide reductase MsrB 0.56 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 91
Pseudomonas stutzeri RCH2 0.58 Psest_1773 methionine-R-sulfoxide reductase 0.40 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH low > 67
Pseudomonas sp. RS175 0.58 PFR28_00985 Peptide methionine sulfoxide reductase MsrB 0.41 PFR28_03869 Ribosomal RNA large subunit methyltransferase H low > 88
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_2253 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.40 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH low > 87
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB 0.41 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 109
Pseudomonas simiae WCS417 0.57 PS417_08565 peptide methionine sulfoxide reductase 0.41 PS417_24730 50S rRNA methyltransferase — —
Pseudomonas fluorescens SBW25 0.57 PFLU_RS08515 peptide-methionine (R)-S-oxide reductase MsrB 0.41 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 109
Pseudomonas sp. S08-1 0.56 OH686_22580 Peptide-methionine (R)-S-oxide reductase MsrB 0.40 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH low > 80
Shewanella sp. ANA-3 0.54 Shewana3_4333 methionine-R-sulfoxide reductase (RefSeq) 0.45 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.54 MIT1002_02396 Peptide methionine sulfoxide reductase MsrB 0.46 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF4579 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.57 GFF4529 LSU m3Psi1915 methyltransferase RlmH low > 90
Enterobacter asburiae PDN3 0.52 EX28DRAFT_1772 methionine-R-sulfoxide reductase 0.47 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01954 Peptide methionine sulfoxide reductase MsrB 0.46 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H — —
Enterobacter sp. TBS_079 0.52 MPMX20_01845 Peptide methionine sulfoxide reductase MsrB 0.46 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H low > 85
Escherichia coli ECOR27 0.52 NOLOHH_17265 msrB Peptide methionine sulfoxide reductase MsrB 0.45 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Escherichia coli Nissle 1917 0.52 ECOLIN_RS09915 peptide-methionine (R)-S-oxide reductase MsrB 0.46 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC98 0.52 JDDGAC_01310 msrB Peptide methionine sulfoxide reductase MsrB 0.45 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC100 0.52 OKFHMN_26735 msrB Peptide methionine sulfoxide reductase MsrB 0.45 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 80
Escherichia coli BL21 0.52 ECD_01747 methionine sulfoxide reductase B 0.46 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent — —
Escherichia coli ECRC99 0.52 KEDOAH_01375 msrB Peptide methionine sulfoxide reductase MsrB 0.45 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECOR38 0.52 HEPCGN_05125 msrB Peptide methionine sulfoxide reductase MsrB 0.45 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 87
Escherichia fergusonii Becca 0.52 EFB2_02216 Peptide methionine sulfoxide reductase MsrB 0.45 EFB2_03456 Ribosomal RNA large subunit methyltransferase H low > 86
Escherichia coli ECRC62 0.52 BNILDI_16050 msrB Peptide methionine sulfoxide reductase MsrB 0.45 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli BW25113 0.52 b1778 yeaA methionine sulfoxide reductase B (NCBI) 0.46 b0636 ybeA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 0.52 MCAODC_18675 msrB Peptide methionine sulfoxide reductase MsrB 0.45 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 87
Escherichia coli ECRC102 0.52 NIAGMN_01330 msrB Peptide methionine sulfoxide reductase MsrB 0.45 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Marinobacter adhaerens HP15 0.51 HP15_3127 methionine sulfoxide reductase B 0.50 HP15_604 conserved hypothetical protein CHP00246 low > 73
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU0576 msrB peptide methionine sulfoxide reductase MsrB (TIGR) 0.24 DVU1254 conserved hypothetical protein (TIGR) low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF3479 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) 0.46 GFF4549 LSU m3Psi1915 methyltransferase RlmH low > 78
Rahnella sp. WP5 0.50 EX31_RS06285 peptide-methionine (R)-S-oxide reductase MsrB 0.48 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 89
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_09970 peptide-methionine (R)-S-oxide reductase 0.48 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 62
Klebsiella michiganensis M5al 0.49 BWI76_RS11515 peptide-methionine (R)-S-oxide reductase 0.47 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 92
Serratia liquefaciens MT49 0.49 IAI46_14350 peptide-methionine (R)-S-oxide reductase MsrB 0.48 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 86
Erwinia tracheiphila SCR3 0.49 LU632_RS12990 msrB peptide-methionine (R)-S-oxide reductase MsrB 0.48 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 74
Pectobacterium carotovorum WPP14 0.48 HER17_RS11125 peptide-methionine (R)-S-oxide reductase MsrB 0.49 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Pantoea sp. MT58 0.48 IAI47_08950 peptide-methionine (R)-S-oxide reductase MsrB 0.48 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 62
Azospirillum brasilense Sp245 0.46 AZOBR_RS02680 methionine sulfoxide reductase B 0.34 AZOBR_RS04060 50S rRNA methyltransferase 0.32 87
Dickeya dianthicola 67-19 0.45 HGI48_RS10280 peptide-methionine (R)-S-oxide reductase MsrB 0.47 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Dickeya dianthicola ME23 0.45 DZA65_RS10755 peptide-methionine (R)-S-oxide reductase MsrB 0.48 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Dickeya dadantii 3937 0.44 DDA3937_RS10270 peptide-methionine (R)-S-oxide reductase MsrB 0.48 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Azospirillum sp. SherDot2 0.44 MPMX19_06019 Peptide methionine sulfoxide reductase MsrB 0.32 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H low > 112
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_02265 peptide methionine sulfoxide reductase msrB 0.28 CCNA_03546 rRNA large subunit methyltransferase low > 67
Caulobacter crescentus NA1000 0.41 CCNA_02265 peptide methionine sulfoxide reductase msrB 0.28 CCNA_03546 rRNA large subunit methyltransferase low > 66

Not shown: 6 genomes with orthologs for HSERO_RS11215 only; 25 genomes with orthologs for HSERO_RS17780 only