Conservation of cofitness between HSERO_RS12590 and HSERO_RS16500 in Herbaspirillum seropedicae SmR1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS12590 ethanolamin permease 1.0 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.47 7
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS00030 ethanolamine permease 0.86 QEN71_RS17620 3-isopropylmalate dehydrogenase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.80 H281DRAFT_02303 ethanolamine:proton symporter, EAT family 0.86 H281DRAFT_06072 3-isopropylmalate dehydrogenase low > 103
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS00100 ethanolamine permease 0.85 BPHYT_RS33900 3-isopropylmalate dehydrogenase low > 109
Paraburkholderia graminis OAS925 0.80 ABIE53_000359 ethanolamine permease 0.86 ABIE53_004804 3-isopropylmalate dehydrogenase low > 113
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS21315 ethanolamine permease 0.91 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Rahnella sp. WP5 0.74 EX31_RS20130 ethanolamine permease 0.47 EX31_RS03685 3-isopropylmalate dehydrogenase low > 89
Azospirillum sp. SherDot2 0.73 MPMX19_05701 Putrescine transporter PotE 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase low > 112
Rhodospirillum rubrum S1H 0.72 Rru_A1030 Amino acid permease-associated region (NCBI) 0.52 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) low > 58
Klebsiella michiganensis M5al 0.71 BWI76_RS06010 ethanolamine permease 0.49 BWI76_RS04675 3-isopropylmalate dehydrogenase low > 92
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_4978 Ethanolamine permease 0.65 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 103
Pseudomonas sp. RS175 0.69 PFR28_03886 putative amino acid permease YhdG 0.64 PFR28_02821 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_1341 Ethanolamine permease 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_15220 ethanolamine permease 0.65 AO356_21415 3-isopropylmalate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2672 Ethanolamine permease 0.64 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_06565 ethanolamine permease 0.64 AO353_20635 3-isopropylmalate dehydrogenase low > 101
Pseudomonas sp. S08-1 0.68 OH686_07700 ethanolamine permease 0.62 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas fluorescens SBW25 0.68 PFLU_RS08215 ethanolamine permease 0.65 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS08215 ethanolamine permease 0.65 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.68 PS417_08275 ethanolamin permease 0.65 PS417_18585 3-isopropylmalate dehydrogenase low > 88
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_1835 ethanolamine:proton symporter, EAT family 0.63 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_1835 ethanolamine:proton symporter, EAT family 0.63 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Variovorax sp. OAS795 0.68 ABID97_RS19505 ethanolamine permease 0.81 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Pantoea sp. MT58 0.67 IAI47_14900 ethanolamine permease 0.47 IAI47_16005 3-isopropylmalate dehydrogenase low > 76
Dickeya dianthicola 67-19 0.67 HGI48_RS19510 ethanolamine permease 0.48 HGI48_RS18060 3-isopropylmalate dehydrogenase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS20600 ethanolamine permease 0.48 DZA65_RS19205 3-isopropylmalate dehydrogenase low > 75
Dickeya dadantii 3937 0.67 DDA3937_RS19380 ethanolamine permease 0.48 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2300.1 Ethanolamine permease 0.61 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS24870 ethanolamine permease 0.46 CA265_RS15850 3-isopropylmalate dehydrogenase low > 88
Acinetobacter radioresistens SK82 0.27 MPMX26_01769 putative amino acid permease YhdG 0.61 MPMX26_00348 3-isopropylmalate dehydrogenase — —
Pseudomonas putida KT2440 0.24 PP_0544 Ethanolamine transporter 0.64 PP_1988 3-isopropylmalate dehydrogenase low > 96
Agrobacterium fabrum C58 0.24 Atu2143 ABC transporter, membrane spanning protein (amino acid) 0.49 Atu2791 3-isopropylmalate dehydrogenase low > 89
Pseudomonas stutzeri RCH2 0.23 Psest_0670 ethanolamine permease 0.63 Psest_2589 3-isopropylmalate dehydrogenase low > 67
Sinorhizobium meliloti 1021 0.14 SMc02616 permease transmembrane protein 0.50 SMc04405 3-isopropylmalate dehydrogenase low > 103
Ralstonia solanacearum UW163 0.12 UW163_RS15035 amino acid permease 0.88 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.12 RALBFv3_RS01725 amino acid permease 0.88 RALBFv3_RS02610 3-isopropylmalate dehydrogenase low > 76
Ralstonia sp. UNC404CL21Col 0.12 ABZR87_RS13545 amino acid permease 0.87 ABZR87_RS14530 3-isopropylmalate dehydrogenase low > 80
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_09570 amino acid permease 0.41 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Ralstonia solanacearum GMI1000 0.12 RS_RS08000 amino acid permease 0.87 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.11 RPSI07_RS15760 amino acid permease 0.87 RPSI07_RS14705 3-isopropylmalate dehydrogenase low > 81
Rhodanobacter denitrificans FW104-10B01 0.11 LRK54_RS01520 amino acid permease 0.38 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.60 13
Rhodanobacter denitrificans MT42 0.11 LRK55_RS01310 amino acid permease 0.38 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Lysobacter sp. OAE881 0.10 ABIE51_RS13260 amino acid permease 0.43 ABIE51_RS17585 3-isopropylmalate dehydrogenase low > 62
Dyella japonica UNC79MFTsu3.2 0.10 ABZR86_RS16130 amino acid permease 0.37 ABZR86_RS15950 3-isopropylmalate dehydrogenase low > 74
Caulobacter crescentus NA1000 Δfur 0.10 CCNA_00435 amino acid transporter 0.49 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.10 CCNA_00435 L-proline transporter (from data) 0.49 CCNA_00193 3-isopropylmalate dehydrogenase low > 66
Rhodanobacter sp. FW510-T8 0.10 OKGIIK_05010 potE amino acid permease 0.39 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Rhodopseudomonas palustris CGA009 0.10 TX73_003040 amino acid permease 0.48 TX73_001175 3-isopropylmalate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.09 Ga0059261_1053 amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) 0.61 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.49 49
Escherichia coli BW25113 0.09 b0260 ykfD putative amino acid/amine transport protein (VIMSS) 0.48 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) low > 76
Escherichia coli ECRC62 0.09 BNILDI_18285 puuP putrescine/proton symporter PuuP 0.48 BNILDI_08545 leuA 2-isopropylmalate synthase low > 75
Escherichia coli BL21 0.09 ECD_03221 putative fructoselysine transporter 0.48 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 61
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS05420 amino acid permease 0.39 A4249_RS09995 3-isopropylmalate dehydrogenase low > 48
Escherichia coli ECRC101 0.09 MCAODC_07700 frlA fructoselysine/psicoselysine transporter 0.48 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase low > 87
Escherichia coli ECRC98 0.09 JDDGAC_20800 frlA fructoselysine/psicoselysine transporter 0.48 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.09 OHPLBJKB_00332 putative fructoselysine/psicoselysine transporter FrlA 0.48 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli ECRC99 0.09 KEDOAH_10970 frlA fructoselysine/psicoselysine transporter 0.48 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC102 0.09 NIAGMN_14940 frlA fructoselysine/psicoselysine transporter 0.48 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC100 0.09 OKFHMN_17170 frlA fructoselysine/psicoselysine transporter 0.48 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase low > 80
Escherichia coli ECOR27 0.09 NOLOHH_20135 puuP putrescine/proton symporter PuuP 0.48 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 75
Erwinia tracheiphila SCR3 0.09 LU632_RS03070 aroP aromatic amino acid transporter AroP 0.45 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.08 ABZR88_RS11630 amino acid permease 0.45 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.07 DVU2280 amino acid permease family protein (TIGR) 0.53 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) low > 55
Bosea sp. OAE506 0.07 ABIE41_RS20970 APC family permease 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Castellaniella sp019104865 MT123 0.07 ABCV34_RS10320 amino acid permease 0.76 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48

Not shown: 1 genomes with orthologs for HSERO_RS12590 only; 34 genomes with orthologs for HSERO_RS16500 only