Conservation of cofitness between HSERO_RS22035 and HSERO_RS15310 in Herbaspirillum seropedicae SmR1

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 1.0 HSERO_RS15310 sulfoxide reductase catalytic subunit YedY 0.28 17
Dickeya dianthicola ME23 0.64 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA 0.50 DZA65_RS01395 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 75
Dickeya dadantii 3937 0.64 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA 0.50 DDA3937_RS01415 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA 0.50 HGI48_RS01335 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 71
Alteromonas macleodii MIT1002 0.64 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA 0.51 MIT1002_02309 Sulfoxide reductase catalytic subunit YedY precursor low > 70
Pectobacterium carotovorum WPP14 0.64 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA 0.49 HER17_RS20185 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 75
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.49 EX28DRAFT_3304 Sulfite oxidase and related enzymes low > 76
Pantoea sp. MT58 0.64 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.49 IAI47_02425 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 76
Enterobacter sp. TBS_079 0.63 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.49 MPMX20_04160 Protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 85
Serratia liquefaciens MT49 0.63 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.51 IAI46_22735 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 86
Klebsiella michiganensis M5al 0.63 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.49 BWI76_RS25515 sulfoxide reductase low > 92
Rahnella sp. WP5 0.63 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA 0.51 EX31_RS12225 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.41 82
Pseudomonas stutzeri RCH2 0.62 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.50 Psest_1040 Sulfite oxidase and related enzymes low > 67
Pseudomonas sp. S08-1 0.62 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.52 OH686_08105 Protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 80
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.53 Pf6N2E2_5179 Putative sulfite oxidase subunit YedY low > 103
Shewanella amazonensis SB2B 0.61 Sama_1801 hypothetical protein (RefSeq) 0.46 Sama_1893 putative sulfite oxidase subunit YedY (RefSeq) low > 62
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 0.53 Pf1N1B4_2882 Putative sulfite oxidase subunit YedY low > 87
Shewanella sp. ANA-3 0.60 Shewana3_2117 PP-loop domain-containing protein (RefSeq) 0.49 Shewana3_2234 putative sulfite oxidase subunit YedY (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.53 AO353_14515 sulfoxide reductase catalytic subunit YedY low > 101
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.53 AO356_16190 sulfoxide reductase catalytic subunit YedY low > 104
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_3705 conserved hypothetical protein 0.54 Psyr_0850 Oxidoreductase, molybdopterin binding protein low > 86
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.53 PfGW456L13_1542 Putative sulfite oxidase subunit YedY low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_3705 conserved hypothetical protein 0.54 Psyr_0850 Oxidoreductase, molybdopterin binding protein low > 86
Pseudomonas sp. RS175 0.60 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.53 PFR28_03695 Protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 88
Pseudomonas simiae WCS417 0.60 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.52 PS417_23790 sulfoxide reductase catalytic subunit YedY low > 88
Dechlorosoma suillum PS 0.60 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.58 Dsui_1300 sulfite oxidase-like oxidoreductase low > 51
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA 0.64 RR42_RS19060 sulfoxide reductase catalytic subunit YedY low > 128
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA 0.65 ABZR87_RS02650 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 80
Ralstonia solanacearum PSI07 0.59 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.66 RPSI07_RS10240 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 81
Pseudomonas fluorescens SBW25 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.53 PFLU_RS25630 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 109
Pseudomonas putida KT2440 0.59 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.54 PP_4676 methionine sulfoxide reductase catalytic subunit low > 96
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.53 PFLU_RS25630 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 109
Shewanella oneidensis MR-1 0.59 SO2354 conserved hypothetical protein (NCBI ptt file) 0.50 SO2042 conserved hypothetical protein (NCBI ptt file) low > 76
Ralstonia solanacearum GMI1000 0.59 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA 0.64 RS_RS14940 mononuclear molybdenum enzyme YedY low > 80
Ralstonia solanacearum UW163 0.59 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.64 UW163_RS06615 protein-methionine-sulfoxide reductase catalytic subunit MsrP — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.64 RALBFv3_RS07000 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 76
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1817 tRNA(Cytosine32)-2-thiocytidine synthetase 0.63 Ac3H11_2976 Putative sulfite oxidase subunit YedY low > 79
Paraburkholderia graminis OAS925 0.59 ABIE53_000036 tRNA 2-thiocytidine biosynthesis protein TtcA 0.65 ABIE53_003751 sulfoxide reductase catalytic subunit YedY low > 113
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_05824 tRNA s(2)C-32 sulfurtransferase 0.65 H281DRAFT_05604 sulfoxide reductase catalytic subunit YedY low > 103
Marinobacter adhaerens HP15 0.58 HP15_2116 PP-loop domain protein 0.49 HP15_535 sulfite oxidase subunit YedY low > 73
Shewanella loihica PV-4 0.58 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.44 Shew_2123 putative sulfite oxidase subunit YedY (RefSeq) low > 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF1658 tRNA(Cytosine32)-2-thiocytidine synthetase 0.62 GFF1348 Putative sulfite oxidase subunit YedY low > 90
Variovorax sp. OAS795 0.56 ABID97_RS06505 tRNA 2-thiocytidine(32) synthetase TtcA 0.61 ABID97_RS23315 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 91
Castellaniella sp019104865 MT123 0.56 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA 0.56 ABCV34_RS15010 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 48
Erwinia tracheiphila SCR3 0.56 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.47 LU632_RS21465 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 74
Variovorax sp. SCN45 0.56 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.61 GFF5313 Protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 127
Lysobacter sp. OAE881 0.54 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.52 ABIE51_RS12155 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 62
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.5211.1 tRNA(Cytosine32)-2-thiocytidine synthetase 0.53 Xcc-8004.3284.1 Putative sulfite oxidase subunit YedY low > 74
Dinoroseobacter shibae DFL-12 0.46 Dshi_0330 PP-loop domain protein (RefSeq) 0.49 Dshi_0623 oxidoreductase molybdopterin binding (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.46 PGA1_c02110 tRNA 2-thiocytidine biosynthesis protein TtcA 0.46 PGA1_c32400 putative molybdopterin-binding oxidoreductase low > 62
Sinorhizobium meliloti 1021 0.45 SMc00534 C32 tRNA thiolase 0.51 SMc01281 sulfite oxidase subunit YedY low > 103
Rhizobium sp. OAE497 0.45 ABIE40_RS10230 tRNA 2-thiocytidine(32) synthetase TtcA 0.54 ABIE40_RS08000 protein-methionine-sulfoxide reductase catalytic subunit MsrP low > 107
Agrobacterium fabrum C58 0.43 Atu1858 hypothetical protein 0.52 Atu1919 hypothetical protein low > 89

Not shown: 26 genomes with orthologs for HSERO_RS22035 only; 9 genomes with orthologs for HSERO_RS15310 only