Conservation of cofitness between HSERO_RS01560 and HSERO_RS11070 in Herbaspirillum seropedicae SmR1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01560 transporter 1.0 HSERO_RS11070 nicotinate-nucleotide pyrophosphorylase 0.35 12
Dechlorosoma suillum PS 0.79 Dsui_2026 hydrophobe/amphiphile efflux-1 (HAE1) family transporter 0.51 Dsui_2901 nicotinate-nucleotide pyrophosphorylase — —
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS20105 efflux RND transporter permease subunit 0.63 QEN71_RS03065 carboxylating nicotinate-nucleotide diphosphorylase low > 153
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS22515 multidrug efflux RND transporter permease subunit 0.63 BPHYT_RS15645 nicotinate-nucleotide pyrophosphorylase 0.22 17
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_03190 multidrug efflux pump 0.59 H281DRAFT_04070 nicotinate-nucleotide pyrophosphorylase [carboxylating] low > 103
Paraburkholderia graminis OAS925 0.76 ABIE53_004106 multidrug efflux pump 0.61 ABIE53_003293 nicotinate-nucleotide pyrophosphorylase (carboxylating) low > 113
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS19400 efflux RND transporter permease subunit 0.63 ABZR87_RS00350 carboxylating nicotinate-nucleotide diphosphorylase low > 80
Ralstonia solanacearum PSI07 0.72 RPSI07_RS05175 multidrug efflux RND transporter permease subunit 0.65 RPSI07_RS12655 nicotinate-nucleotide diphosphorylase (carboxylating) low > 81
Ralstonia solanacearum UW163 0.72 UW163_RS20755 multidrug efflux RND transporter permease subunit 0.64 UW163_RS08940 nicotinate-nucleotide diphosphorylase (carboxylating) — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS18375 multidrug efflux RND transporter permease subunit 0.64 RALBFv3_RS04730 nicotinate-nucleotide diphosphorylase (carboxylating) low > 76
Azospirillum sp. SherDot2 0.71 MPMX19_02968 multidrug efflux RND transporter permease subunit OqxB28 0.31 MPMX19_05672 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] — —
Ralstonia solanacearum GMI1000 0.71 RS_RS22490 multidrug efflux RND transporter permease subunit 0.62 RS_RS12290 nicotinate-nucleotide diphosphorylase (carboxylating) low > 80
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS27685 multidrug efflux RND transporter permease subunit 0.65 RR42_RS17015 nicotinate-nucleotide pyrophosphorylase low > 128
Acidovorax sp. GW101-3H11 0.69 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein 0.52 Ac3H11_3838 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 79
Variovorax sp. SCN45 0.68 GFF429 RND efflux system, inner membrane transporter 0.45 GFF2574 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 127
Variovorax sp. OAS795 0.67 ABID97_RS17350 efflux RND transporter permease subunit 0.48 ABID97_RS07410 carboxylating nicotinate-nucleotide diphosphorylase low > 91
Rhizobium sp. OAE497 0.67 ABIE40_RS14875 multidrug efflux RND transporter permease subunit 0.32 ABIE40_RS23265 carboxylating nicotinate-nucleotide diphosphorylase low > 107
Rhodospirillum rubrum S1H 0.66 Rru_A0886 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) 0.33 Rru_A1432 Nicotinate-nucleotide pyrophosphorylase (NCBI) low > 58
Pseudomonas sp. RS175 0.66 PFR28_02013 multidrug efflux RND transporter permease subunit OqxB10 0.52 PFR28_00098 Nicotinate-nucleotide pyrophosphorylase [carboxylating] low > 88
Sinorhizobium meliloti 1021 0.66 SMc01095 multidrug-efflux system transmembrane protein 0.28 SMc02598 nicotinate-nucleotide pyrophosphorylase carboxylating protein low > 103
Agrobacterium fabrum C58 0.63 Atu2483 AcrB/AcrD/AcrF family protein 0.34 Atu4096 nicotinate-nucleotide pyrophosphorylase low > 89
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.50 Psyr_0815 nicotinate-nucleotide pyrophosphorylase (carboxylating) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.50 Psyr_0815 nicotinate-nucleotide pyrophosphorylase (carboxylating) low > 86
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_27605 transporter 0.49 AO356_07370 nicotinate-nucleotide pyrophosphorylase low > 104
Pseudomonas putida KT2440 0.61 PP_3426 Multidrug efflux RND transporter MexF 0.48 PP_0787 quinolinate phosphoribosyltransferase (decarboxylating) monomer low > 96
Pseudomonas simiae WCS417 0.61 PS417_13190 transporter 0.50 PS417_03925 nicotinate-nucleotide pyrophosphorylase low > 88
Pseudomonas fluorescens SBW25 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.50 PFLU_RS03970 carboxylating nicotinate-nucleotide diphosphorylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.50 PFLU_RS03970 carboxylating nicotinate-nucleotide diphosphorylase low > 109
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_23960 transporter 0.50 AO353_05520 nicotinate-nucleotide pyrophosphorylase low > 101
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3060 Multidrug efflux transporter MexF 0.49 PfGW456L13_5082 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) 0.42 69
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS08140 multidrug efflux RND transporter permease subunit 0.49 LRK54_RS13795 carboxylating nicotinate-nucleotide diphosphorylase low > 59
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4864 Multidrug efflux transporter MexF 0.50 Pf1N1B4_1153 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 87
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_824 Multidrug efflux transporter MexF 0.49 Pf6N2E2_3346 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 103
Rhodanobacter denitrificans MT42 0.61 LRK55_RS07890 efflux RND transporter permease subunit 0.48 LRK55_RS13510 carboxylating nicotinate-nucleotide diphosphorylase low > 63
Pseudomonas stutzeri RCH2 0.60 Psest_2144 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.50 Psest_0718 nicotinate-nucleotide pyrophosphorylase low > 67
Pseudomonas sp. S08-1 0.60 OH686_01005 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.48 OH686_16520 nicotinate-nucleotide diphosphorylase (carboxylating) low > 80
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS15400 efflux RND transporter permease subunit 0.48 ABZR86_RS09850 carboxylating nicotinate-nucleotide diphosphorylase low > 74
Shewanella sp. ANA-3 0.59 Shewana3_1078 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.37 Shewana3_0422 nicotinate-nucleotide pyrophosphorylase [carboxylating] (RefSeq) — —
Alteromonas macleodii MIT1002 0.58 MIT1002_02998 Efflux pump membrane transporter BepE 0.40 MIT1002_03008 Nicotinate-nucleotide pyrophosphorylase [carboxylating] — —
Pantoea sp. MT58 0.57 IAI47_10310 multidrug efflux RND transporter permease subunit OqxB 0.39 IAI47_15845 carboxylating nicotinate-nucleotide diphosphorylase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF4246 RND efflux system, inner membrane transporter CmeB 0.41 GFF130 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 78
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.3477.1 RND efflux system, inner membrane transporter CmeB 0.40 Xcc-8004.2009.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS12955 multidrug efflux RND transporter permease subunit OqxB 0.39 BWI76_RS04845 nicotinate-nucleotide pyrophosphorylase low > 92
Rahnella sp. WP5 0.55 EX31_RS01495 multidrug efflux RND transporter permease subunit 0.45 EX31_RS03515 carboxylating nicotinate-nucleotide diphosphorylase low > 89
Enterobacter sp. TBS_079 0.55 MPMX20_01155 multidrug efflux RND transporter permease subunit OqxB3 0.40 MPMX20_00800 Nicotinate-nucleotide pyrophosphorylase [carboxylating] low > 85
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1472 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.41 EX28DRAFT_3702 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) low > 76
Serratia liquefaciens MT49 0.54 IAI46_13385 efflux RND transporter permease subunit 0.43 IAI46_03530 carboxylating nicotinate-nucleotide diphosphorylase low > 86
Sphingomonas koreensis DSMZ 15582 0.53 Ga0059261_0436 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.34 Ga0059261_0061 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) — —
Lysobacter sp. OAE881 0.53 ABIE51_RS01060 multidrug efflux RND transporter permease subunit 0.42 ABIE51_RS15405 carboxylating nicotinate-nucleotide diphosphorylase low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS09925 multidrug efflux RND transporter permease subunit 0.32 A4249_RS00635 carboxylating nicotinate-nucleotide diphosphorylase low > 48
Shewanella loihica PV-4 0.44 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.42 Shew_3435 nicotinate-nucleotide pyrophosphorylase (RefSeq) — —

Not shown: 4 genomes with orthologs for HSERO_RS01560 only; 48 genomes with orthologs for HSERO_RS11070 only