Conservation of cofitness between HSERO_RS03475 and HSERO_RS09415 in Herbaspirillum seropedicae SmR1

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03475 NUDIX hydrolase 1.0 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.35 14
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.49 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05740 NUDIX hydrolase 0.59 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.59 UW163_RS07885 NUDIX hydrolase 0.59 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS11560 NUDIX hydrolase 0.59 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.47 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Ralstonia solanacearum GMI1000 0.59 RS_RS13630 NUDIX hydrolase 0.59 RS_RS05155 RluA family pseudouridine synthase low > 80
Paraburkholderia graminis OAS925 0.59 ABIE53_000811 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) 0.60 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Variovorax sp. SCN45 0.58 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ 0.49 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family 0.60 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01335 NUDIX hydrolase 0.60 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS17470 NUDIX hydrolase 0.58 RR42_RS14155 pseudouridine synthase low > 128
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26735 NUDIX hydrolase 0.59 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Variovorax sp. OAS795 0.55 ABID97_RS04420 NUDIX hydrolase 0.47 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS03365 NUDIX hydrolase 0.59 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Dechlorosoma suillum PS 0.52 Dsui_3338 Zn-finger containing NTP pyrophosphohydrolase 0.52 Dsui_2437 pseudouridine synthase, RluA family low > 51
Pseudomonas fluorescens SBW25 0.42 PFLU_RS18575 NUDIX hydrolase 0.42 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS18575 NUDIX hydrolase 0.42 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.2757.1 Nudix-like NDP and NTP phosphohydrolase YmfB 0.34 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Pseudomonas simiae WCS417 0.41 PS417_16535 NUDIX hydrolase 0.42 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS02190 NUDIX hydrolase 0.32 ABZR86_RS02725 RluA family pseudouridine synthase low > 74
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.41 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_22115 NUDIX hydrolase 0.42 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Pseudomonas sp. RS175 0.40 PFR28_02618 Phosphatase NudJ 0.42 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_27700 NUDIX hydrolase 0.42 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.42 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3189 NUDIX hydrolase 0.42 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3189 NUDIX hydrolase 0.42 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.41 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Lysobacter sp. OAE881 0.39 ABIE51_RS11505 NUDIX hydrolase 0.35 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Pseudomonas stutzeri RCH2 0.38 Psest_2022 ADP-ribose pyrophosphatase 0.41 Psest_1680 pseudouridine synthase, RluA family — —
Pseudomonas sp. S08-1 0.38 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.41 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1838 ADP-ribose pyrophosphatase 0.42 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_06880 Phosphatase NudJ 0.37 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase low > 52
Rhodanobacter denitrificans MT42 0.38 LRK55_RS00170 NUDIX hydrolase 0.38 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Pseudomonas putida KT2440 0.37 PP_4013 MutT/nudix family protein 0.40 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS00430 NUDIX hydrolase 0.38 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Acinetobacter radioresistens SK82 0.34 MPMX26_01049 Phosphatase NudJ 0.35 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Marinobacter adhaerens HP15 0.34 HP15_2085 MutT/nudix family protein 0.42 HP15_2221 pseudouridine synthase, RluA family low > 73
Shewanella loihica PV-4 0.34 Shew_1561 NUDIX hydrolase (RefSeq) 0.43 Shew_1594 RluA family pseudouridine synthase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.33 Sama_2061 MutT/nudix family protein (RefSeq) 0.46 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Rahnella sp. WP5 0.29 EX31_RS24580 NUDIX hydrolase 0.44 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Shewanella sp. ANA-3 0.29 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.44 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Escherichia coli ECRC62 0.24 BNILDI_19060 nudJ phosphatase NudJ 0.42 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC100 0.24 OKFHMN_00750 nudJ phosphatase NudJ 0.42 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia fergusonii Becca 0.24 EFB2_02841 Phosphatase NudJ 0.42 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli ECRC101 0.24 MCAODC_22335 nudJ phosphatase NudJ 0.42 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli Nissle 1917 0.24 ECOLIN_RS06630 phosphatase NudJ 0.42 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC99 0.24 KEDOAH_24835 nudJ phosphatase NudJ 0.42 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli BL21 0.24 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.42 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase — —
Escherichia coli ECOR38 0.24 HEPCGN_24225 nudJ phosphatase NudJ 0.42 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_02534 Phosphatase NudJ 0.42 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECRC102 0.24 NIAGMN_24895 nudJ phosphatase NudJ 0.42 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECOR27 0.24 NOLOHH_20895 nudJ phosphatase NudJ 0.42 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC98 0.24 JDDGAC_06615 nudJ phosphatase NudJ 0.42 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli BW25113 0.24 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.42 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Enterobacter sp. TBS_079 0.24 MPMX20_01818 Phosphatase NudJ 0.42 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Klebsiella michiganensis M5al 0.23 BWI76_RS11320 NUDIX hydrolase 0.43 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase — —
Serratia liquefaciens MT49 0.23 IAI46_10445 NUDIX hydrolase 0.42 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Enterobacter asburiae PDN3 0.23 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.42 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Erwinia tracheiphila SCR3 0.23 LU632_RS14570 NUDIX hydrolase 0.43 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.42 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Pectobacterium carotovorum WPP14 0.22 HER17_RS11620 NUDIX hydrolase 0.42 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dadantii 3937 0.22 DDA3937_RS11480 NUDIX hydrolase 0.41 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Dickeya dianthicola 67-19 0.22 HGI48_RS11525 NUDIX hydrolase 0.41 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS11860 NUDIX hydrolase 0.41 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pantoea sp. MT58 0.21 IAI47_11910 NUDIX hydrolase 0.41 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76

Not shown: 1 genomes with orthologs for HSERO_RS03475 only; 15 genomes with orthologs for HSERO_RS09415 only