Conservation of cofitness between HSERO_RS07610 and HSERO_RS08405 in Herbaspirillum seropedicae SmR1

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07610 fumarate hydratase 1.0 HSERO_RS08405 membrane protein 0.37 15
Ralstonia solanacearum GMI1000 0.73 RS_RS23320 class II fumarate hydratase 0.41 RS_RS11430 HlyC/CorC family transporter 0.70 16
Ralstonia solanacearum PSI07 0.73 RPSI07_RS05900 class II fumarate hydratase 0.41 RPSI07_RS13270 HlyC/CorC family transporter low > 81
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS18630 class II fumarate hydratase 0.42 ABZR87_RS15885 hemolysin family protein low > 80
Ralstonia solanacearum IBSBF1503 0.73 RALBFv3_RS17680 class II fumarate hydratase 0.40 RALBFv3_RS03950 HlyC/CorC family transporter
Ralstonia solanacearum UW163 0.73 UW163_RS21470 class II fumarate hydratase 0.40 UW163_RS09720 HlyC/CorC family transporter
Enterobacter sp. TBS_079 0.72 MPMX20_02022 Fumarate hydratase class II 0.53 MPMX20_00495 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.72 EX28DRAFT_1608 fumarase, class II (EC 4.2.1.2) 0.52 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS16270 fumarate hydratase, class II 0.52 BWI76_RS02765 membrane protein low > 92
Variovorax sp. SCN45 0.72 GFF479 Fumarate hydratase class II (EC 4.2.1.2) 0.47 GFF2520 UPF0053 inner membrane protein YtfL low > 127
Dickeya dianthicola ME23 0.71 DZA65_RS11125 class II fumarate hydratase 0.52 DZA65_RS18310 HlyC/CorC family transporter low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS10655 class II fumarate hydratase 0.52 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Magnetospirillum magneticum AMB-1 0.71 AMB_RS18480 class II fumarate hydratase 0.23 AMB_RS10875 HlyC/CorC family transporter low > 64
Rahnella sp. WP5 0.71 EX31_RS06965 class II fumarate hydratase 0.52 EX31_RS08705 HlyC/CorC family transporter low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02115 Fumarate hydratase class II 0.53 OHPLBJKB_03816 hypothetical protein low > 73
Dickeya dianthicola 67-19 0.71 HGI48_RS10655 class II fumarate hydratase 0.52 HGI48_RS17225 HlyC/CorC family transporter low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF1806 Fumarate hydratase class II (EC 4.2.1.2) 0.52 GFF871 Putative membrane protein low > 78
Pectobacterium carotovorum WPP14 0.71 HER17_RS10755 class II fumarate hydratase 0.51 HER17_RS03970 hemolysin family protein low > 75
Acidovorax sp. GW101-3H11 0.71 Ac3H11_943 Fumarate hydratase class II (EC 4.2.1.2) 0.47 Ac3H11_4775 Putative membrane protein low > 79
Serratia liquefaciens MT49 0.71 IAI46_11655 class II fumarate hydratase 0.54 IAI46_01760 HlyC/CorC family transporter low > 86
Variovorax sp. OAS795 0.71 ABID97_RS17545 class II fumarate hydratase 0.49 ABID97_RS07170 hemolysin family protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF4101 Fumarate hydratase class II (EC 4.2.1.2) 0.25 GFF4625 Magnesium and cobalt efflux protein CorC low > 90
Pantoea sp. MT58 0.70 IAI47_10335 class II fumarate hydratase 0.51 IAI47_02710 HlyC/CorC family transporter low > 76
Escherichia coli ECRC100 0.70 OKFHMN_27650 fumC class II fumarate hydratase 0.53 OKFHMN_12015 paeA Polyamine export protein low > 80
Escherichia fergusonii Becca 0.70 EFB2_02381 Fumarate hydratase class II 0.53 EFB2_04311 hypothetical protein low > 86
Escherichia coli ECRC99 0.70 KEDOAH_00455 fumC class II fumarate hydratase 0.53 KEDOAH_16140 paeA Polyamine export protein
Escherichia coli ECRC101 0.70 MCAODC_17760 fumC class II fumarate hydratase 0.53 MCAODC_02530 paeA Polyamine export protein low > 87
Escherichia coli ECRC98 0.70 JDDGAC_02240 fumC class II fumarate hydratase 0.53 JDDGAC_15655 paeA Polyamine export protein low > 86
Escherichia coli ECRC62 0.70 BNILDI_16945 fumC class II fumarate hydratase 0.53 BNILDI_07240 tlyC Polyamine export protein low > 75
Escherichia coli ECRC102 0.70 NIAGMN_00425 fumC class II fumarate hydratase 0.53 NIAGMN_09865 paeA Polyamine export protein
Escherichia coli Nissle 1917 0.70 ECOLIN_RS08995 class II fumarate hydratase 0.53 ECOLIN_RS24495 hemolysin family protein
Escherichia coli BW25113 0.70 b1611 fumC fumarate hydratase (NCBI) 0.53 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECOR27 0.70 NOLOHH_18155 fumC class II fumarate hydratase 0.53 NOLOHH_04280 paeA Polyamine export protein low > 75
Dechlorosoma suillum PS 0.70 Dsui_0926 fumarate hydratase, class II 0.28 Dsui_3105 CBS domain-containing protein low > 51
Escherichia coli ECOR38 0.70 HEPCGN_06025 fumC class II fumarate hydratase 0.53 HEPCGN_10215 paeA Polyamine export protein low > 87
Escherichia coli BL21 0.70 ECD_01580 fumarate hydratase (fumarase C),aerobic Class II 0.53 ECD_04089 UPF0053 family inner membrane protein
Erwinia tracheiphila SCR3 0.69 LU632_RS12335 fumC class II fumarate hydratase 0.51 LU632_RS02100 hemolysin family protein low > 74
Acinetobacter radioresistens SK82 0.61 MPMX26_01446 Fumarate hydratase class II 0.51 MPMX26_02321 hypothetical protein low > 36
Brevundimonas sp. GW460-12-10-14-LB2 0.59 A4249_RS05005 class II fumarate hydratase 0.23 A4249_RS08175 hemolysin family protein
Rhodopseudomonas palustris CGA009 0.59 TX73_018130 class II fumarate hydratase 0.23 TX73_014560 hemolysin family protein low > 86
Azospirillum sp. SherDot2 0.59 MPMX19_01424 Fumarate hydratase class II 0.26 MPMX19_04101 hypothetical protein low > 112
Sinorhizobium meliloti 1021 0.58 SMc00149 fumarate hydratase 0.24 SMc00240 hypothetical protein
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU0080 fumC fumarate hydratase, class II (TIGR) 0.24 DVU2148 CBS/transporter associated domain protein (TIGR) low > 55
Dinoroseobacter shibae DFL-12 0.57 Dshi_2334 fumarate hydratase, class II (RefSeq) 0.20 Dshi_3672 protein of unknown function DUF21 (RefSeq)
Azospirillum brasilense Sp245 0.56 AZOBR_RS06120 fumarate hydratase 0.27 AZOBR_RS16970 hypothetical protein low > 97
Rhizobium sp. OAE497 0.56 ABIE40_RS10540 class II fumarate hydratase 0.21 ABIE40_RS21835 hemolysin family protein low > 107
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_02194 fumarate hydratase 0.21 CCNA_00369 magnesium and cobalt efflux protein corC-like protein
Caulobacter crescentus NA1000 0.56 CCNA_02194 fumarate hydratase 0.21 CCNA_00369 magnesium and cobalt efflux protein corC-like protein
Rhodospirillum rubrum S1H 0.56 Rru_A2129 Fumarate hydratase, class II (NCBI) 0.24 Rru_A0756 hypothetical protein (NCBI) low > 58
Agrobacterium fabrum C58 0.56 Atu1616 fumarate hydratase 0.21 Atu3732 hemolysin
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS33090 fumarate hydratase 0.42 RR42_RS04375 magnesium transporter low > 128
Bosea sp. OAE506 0.53 ABIE41_RS12805 class II fumarate hydratase 0.21 ABIE41_RS13905 hemolysin family protein
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_1040 fumarase, class II (EC 4.2.1.2) 0.23 Ga0059261_1443 Hemolysins and related proteins containing CBS domains low > 68
Desulfovibrio vulgaris Miyazaki F 0.48 DvMF_2075 fumarate hydratase, class II (RefSeq) 0.24 DvMF_0831 protein of unknown function DUF21 (RefSeq) low > 51
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS05855 class II fumarate hydratase 0.23 ABZR86_RS19900 hemolysin family protein low > 74
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_07895 class II fumarate hydratase 0.51 CSW01_18340 HlyC/CorC family transporter low > 62
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3403.1 Fumarate hydratase class II (EC 4.2.1.2) 0.19 Xcc-8004.3156.1 Magnesium and cobalt efflux protein CorC 0.39 37
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00885 class II fumarate hydratase 0.21 LRK54_RS12975 hemolysin family protein low > 59
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_06345 aspA aspartate ammonia-lyase 0.22 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Rhodanobacter denitrificans MT42 0.41 LRK55_RS00660 class II fumarate hydratase 0.21 LRK55_RS12675 hemolysin family protein low > 63
Lysobacter sp. OAE881 0.41 ABIE51_RS09015 class II fumarate hydratase 0.20 ABIE51_RS06575 hemolysin family protein low > 62
Shewanella amazonensis SB2B 0.40 Sama_0822 fumarate hydratase (RefSeq) 0.51 Sama_3284 hemolysin, putative (RefSeq) low > 62
Shewanella loihica PV-4 0.38 Shew_0068 fumarate lyase (RefSeq) 0.52 Shew_0284 hypothetical protein (RefSeq) low > 60
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS20055 aspartate ammonia-lyase 0.21 ABI39_RS04720 HlyC/CorC family transporter low > 72
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS06295 aspartate ammonia-lyase 0.21 HMPREF1058_RS12080 HlyC/CorC family transporter 0.51 26
Bacteroides thetaiotaomicron VPI-5482 0.36 BT2755 aspartate ammonia-lyase (NCBI ptt file) 0.20 BT0148 putative hemolysin (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.36 BACOVA_01069 aspartate ammonia-lyase 0.20 BACOVA_01289 hypothetical protein low > 94
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS11250 aspartate ammonia-lyase 0.19 HMPREF1181_RS05310 HlyC/CorC family transporter low > 56

Not shown: 30 genomes with orthologs for HSERO_RS07610 only; 3 genomes with orthologs for HSERO_RS08405 only