Conservation of cofitness between HSERO_RS15005 and HSERO_RS01255 in Herbaspirillum seropedicae SmR1

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 1.0 HSERO_RS01255 acyl-CoA dehydrogenase 0.34 19
Ralstonia solanacearum UW163 0.80 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO 0.76 UW163_RS02070 acyl-CoA dehydrogenase — —
Ralstonia solanacearum GMI1000 0.80 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO 0.77 RS_RS02345 acyl-CoA dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.80 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO 0.76 RALBFv3_RS11515 acyl-CoA dehydrogenase low > 76
Ralstonia sp. UNC404CL21Col 0.80 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO 0.78 ABZR87_RS07475 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.80 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO 0.76 RPSI07_RS21695 acyl-CoA dehydrogenase low > 81
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO 0.75 QEN71_RS02060 acyl-CoA dehydrogenase C-terminal domain-containing protein 0.58 30
Burkholderia phytofirmans PsJN 0.79 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO 0.74 BPHYT_RS03220 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) — —
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.79 RR42_RS02505 acyl-CoA dehydrogenase low > 128
Paraburkholderia graminis OAS925 0.79 ABIE53_002068 ribosomal protein S12 methylthiotransferase 0.74 ABIE53_000783 alkylation response protein AidB-like acyl-CoA dehydrogenase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.79 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase 0.75 H281DRAFT_04624 hypothetical protein low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.72 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.71 GFF412 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 90
Variovorax sp. SCN45 0.71 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) 0.72 GFF4610 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) low > 127
Variovorax sp. OAS795 0.71 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO 0.72 ABID97_RS05855 acyl-CoA dehydrogenase C-terminal domain-containing protein 0.52 10
Acidovorax sp. GW101-3H11 0.70 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.71 Ac3H11_1912 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 79
Marinobacter adhaerens HP15 0.66 HP15_2459 MiaB-like tRNA modifying enzyme YliG 0.57 HP15_2479 acyl-CoA dehydrogenase family protein low > 73
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_2522 SSU ribosomal protein S12P methylthiotransferase (EC 2.-.-.-) 0.45 B158DRAFT_1565 Acyl-CoA dehydrogenases low > 40
Pseudomonas sp. RS175 0.62 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.56 PFR28_04096 3-methylmercaptopropionyl-CoA dehydrogenase 0.24 54
Castellaniella sp019104865 MT123 0.62 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.56 ABCV34_RS08075 acyl-CoA dehydrogenase C-terminal domain-containing protein 0.87 30
Acinetobacter radioresistens SK82 0.62 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.55 MPMX26_02628 3-methylmercaptopropionyl-CoA dehydrogenase low > 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.56 Psyr_4681 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.56 Psyr_4681 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region low > 86
Alteromonas macleodii MIT1002 0.62 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO 0.50 MIT1002_01752 Acyl-CoA dehydrogenase low > 70
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 0.56 AO353_07495 acyl-CoA dehydrogenase low > 101
Azospirillum sp. SherDot2 0.62 MPMX19_05761 Ribosomal protein S12 methylthiotransferase RimO 0.54 MPMX19_04899 3-methylmercaptopropionyl-CoA dehydrogenase low > 112
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.57 Pf1N1B4_2493 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 87
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.57 PfGW456L13_1153 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 87
Lysobacter sp. OAE881 0.61 ABIE51_RS08160 30S ribosomal protein S12 methylthiotransferase RimO 0.49 ABIE51_RS15170 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 62
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.57 PFLU_RS27620 acyl-CoA dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.57 PFLU_RS27620 acyl-CoA dehydrogenase low > 109
Azospirillum brasilense Sp245 0.61 AZOBR_RS14980 ribosomal protein S12 methylthiotransferase 0.54 AZOBR_RS20230 acyl-CoA dehydrogenase low > 97
Rhodanobacter denitrificans MT42 0.61 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO 0.49 LRK55_RS12195 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 63
Pseudomonas stutzeri RCH2 0.61 Psest_2632 ribosomal protein S12 methylthiotransferase RimO 0.57 Psest_0417 Acyl-CoA dehydrogenases low > 67
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO 0.49 ABZR86_RS19440 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 74
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.56 Pf6N2E2_4766 Acyl-CoA dehydrogenase (EC 1.3.8.7) low > 103
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO 0.49 LRK54_RS12455 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 59
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.56 AO356_14165 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 104
Pseudomonas simiae WCS417 0.61 PS417_05880 ribosomal protein S12 methylthiotransferase 0.56 PS417_25975 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) low > 88
Pseudomonas sp. S08-1 0.61 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.55 OH686_10320 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] low > 80
Pseudomonas putida KT2440 0.61 PP_1197 ribosomal protein S12 methylthiotransferase 0.57 PP_0368 putative Acyl-CoA dehydrogenase low > 96
Shewanella sp. ANA-3 0.60 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.51 Shewana3_2552 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.60 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.51 SO2768 acyl-CoA dehydrogenase family protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.60 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.36 Sama_1743 Acyl-CoA dehydrogenase (EC 1.3.8.-) (from data) low > 62
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.48 OKGIIK_02065 acyl-CoA dehydrogenase low > 52
Rhodopseudomonas palustris CGA009 0.58 TX73_013865 30S ribosomal protein S12 methylthiotransferase RimO 0.51 TX73_004210 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 86
Rhodospirillum rubrum S1H 0.58 Rru_A2811 hypothetical protein (NCBI) 0.51 Rru_A1308 Acyl-CoA dehydrogenase (NCBI) low > 58
Bosea sp. OAE506 0.57 ABIE41_RS15895 30S ribosomal protein S12 methylthiotransferase RimO 0.51 ABIE41_RS23320 acyl-CoA dehydrogenase C-terminal domain-containing protein low > 77
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.50 Ga0059261_3633 Acyl-CoA dehydrogenases low > 68
Phaeobacter inhibens DSM 17395 0.55 PGA1_c24370 ribosomal protein S12 methylthiotransferase RimO 0.49 PGA1_c12080 putative acyl-CoA dehydrogenase low > 62
Dinoroseobacter shibae DFL-12 0.54 Dshi_2618 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.48 Dshi_0839 acyl-CoA dehydrogenase domain protein (RefSeq) low > 64

Not shown: 38 genomes with orthologs for HSERO_RS15005 only; 9 genomes with orthologs for HSERO_RS01255 only