Conservation of cofitness between HER17_RS04160 and HER17_RS06085 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04160 coniferyl aldehyde dehydrogenase 1.0 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.61 6
Dickeya dadantii 3937 0.72 DDA3937_RS14550 coniferyl aldehyde dehydrogenase 0.87 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 74
Dickeya dianthicola ME23 0.71 DZA65_RS15435 coniferyl aldehyde dehydrogenase 0.86 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 75
Dickeya dianthicola 67-19 0.69 HGI48_RS14500 coniferyl aldehyde dehydrogenase 0.86 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 71
Pseudomonas sp. RS175 0.54 PFR28_01983 Coniferyl aldehyde dehydrogenase 0.51 PFR28_00294 Dual-specificity RNA methyltransferase RlmN low > 88
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_01925 coniferyl aldehyde dehydrogenase 0.36 CCNA_00133 radical SAM family enzyme low > 67
Caulobacter crescentus NA1000 0.48 CCNA_01925 coniferyl aldehyde dehydrogenase 0.36 CCNA_00133 radical SAM family enzyme low > 66
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_1486 NAD-dependent aldehyde dehydrogenases 0.35 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 68
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS04755 coniferyl aldehyde dehydrogenase 0.46 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 80
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1472 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.44 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 79
Variovorax sp. SCN45 0.40 GFF5850 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.45 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) low > 127
Shewanella amazonensis SB2B 0.40 Sama_2855 coniferyl aldehyde dehydrogenase (RefSeq) 0.68 Sama_2368 hypothetical protein (RefSeq) low > 62
Pseudomonas simiae WCS417 0.40 PS417_26845 coniferyl aldehyde dehydrogenase 0.52 PS417_23160 50S rRNA methyltransferase low > 88
Shewanella loihica PV-4 0.40 Shew_3103 aldehyde dehydrogenase (RefSeq) 0.69 Shew_1287 hypothetical protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.39 SO3683 coniferyl aldehyde dehydrogenase (NCBI ptt file) 0.69 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25 0.39 PFLU_RS28490 coniferyl aldehyde dehydrogenase 0.51 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS28490 coniferyl aldehyde dehydrogenase 0.51 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 109
Pseudomonas stutzeri RCH2 0.39 Psest_0247 NAD-dependent aldehyde dehydrogenases 0.51 Psest_1259 23S rRNA m2A2503 methyltransferase low > 67
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS23860 coniferyl aldehyde dehydrogenase 0.46 HSERO_RS14810 50S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_08290 coniferyl aldehyde dehydrogenase 0.52 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase low > 101
Pseudomonas sp. S08-1 0.39 OH686_14170 Aldehyde dehydrogenase / Probable coniferyl aldehyde dehydrogenase 0.51 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 80
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_2579 Aldehyde dehydrogenase 0.53 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_2579 Aldehyde dehydrogenase 0.53 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase low > 86
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_985 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.52 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 87
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS01275 aldehyde dehydrogenase 0.47 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS18745 coniferyl aldehyde dehydrogenase 0.47 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN low > 109
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2315 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.52 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Paraburkholderia graminis OAS925 0.39 ABIE53_000069 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase 0.46 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF3943 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.44 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) low > 90
Shewanella sp. ANA-3 0.38 Shewana3_3251 aldehyde dehydrogenase (RefSeq) 0.69 Shewana3_1226 hypothetical protein (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_05792 coniferyl-aldehyde dehydrogenase 0.47 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4575 Coniferyl aldehyde dehydrogenase (EC 1.2.1.68) 0.51 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_13300 coniferyl aldehyde dehydrogenase 0.51 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase low > 104
Marinobacter adhaerens HP15 0.38 HP15_3329 NAD-dependent aldehyde dehydrogenase 0.50 HP15_1490 conserved hypothetical protein low > 73
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS12980 coniferyl aldehyde dehydrogenase 0.49 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Rhodopseudomonas palustris CGA009 0.37 TX73_008670 coniferyl aldehyde dehydrogenase 0.37 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 86
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS28765 coniferyl aldehyde dehydrogenase 0.47 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 153
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0768 NAD-dependent aldehyde dehydrogenases 0.54 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase low > 40
Acinetobacter radioresistens SK82 0.36 MPMX26_00376 Coniferyl aldehyde dehydrogenase 0.51 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.64 19
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_16495 Aldehyde dehydrogenase 0.48 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 52
Pseudomonas putida KT2440 0.36 PP_5120 coniferyl aldehyde dehydrogenase 0.51 PP_0850 Dual-specificity RNA methyltransferase RlmN low > 96
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_19420 coniferyl aldehyde dehydrogenase 0.67 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN low > 62
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS07140 coniferyl aldehyde dehydrogenase 0.50 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 59
Rhodanobacter denitrificans MT42 0.35 LRK55_RS06880 coniferyl aldehyde dehydrogenase 0.50 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 63
Variovorax sp. OAS795 0.34 ABID97_RS26110 coniferyl aldehyde dehydrogenase 0.44 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 91
Lysobacter sp. OAE881 0.34 ABIE51_RS01765 coniferyl aldehyde dehydrogenase 0.45 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS21385 aldehyde dehydrogenase family protein 0.31 CA265_RS19115 23S rRNA (adenine(2503)-C(2))-methyltransferase low > 88
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_0489 aldA aldehyde dehydrogenase 0.27 Synpcc7942_1758 hypothetical protein low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1497 NAD-dependent aldehyde dehydrogenases 0.31 Echvi_0755 23S rRNA m2A2503 methyltransferase low > 79
Alteromonas macleodii MIT1002 0.30 MIT1002_00534 Aldehyde dehydrogenase 0.69 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_09240 aldehyde dehydrogenase 0.31 CA264_15910 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 74
Bifidobacterium breve UCC2003 0.27 BBR_RS13365 aldehyde dehydrogenase family protein 0.24 BBR_RS16105 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN low > 34
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_2633 Aldehyde Dehydrogenase (RefSeq) 0.31 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) low > 51

Not shown: 1 genomes with orthologs for HER17_RS04160 only; 48 genomes with orthologs for HER17_RS06085 only