| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sphingobium sp. HT1-2 | 1.0 | GFF3757 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)' transl_table=11 | 1.0 | GFF548 | | Transcriptional regulator, GntR family | 0.77 | 6 |
| Sinorhizobium meliloti 1021 | 0.56 | SMc00184 | | tRNA/rRNA methyltransferase | 0.26 | SMa0789 | | GntR family transcriptional regulator | low | > 103 |
| Agrobacterium fabrum C58 | 0.56 | Atu2244 | | tRNA/rRNA methyltransferase | 0.26 | Atu4232 | | GntR family transcriptional regulator | low | > 89 |
| Rhizobium sp. OAE497 | 0.55 | ABIE40_RS13160 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.18 | ABIE40_RS23240 | | FCD domain-containing protein | low | > 107 |
| Xanthobacter sp. DMC5 | 0.55 | GFF59 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.29 | GFF1609 | | HTH-type transcriptional repressor RspR | — | — |
| Rhodospirillum rubrum S1H | 0.51 | Rru_A0365 | | tRNA/rRNA methyltransferase (SpoU) (NCBI) | 0.18 | Rru_A1347 | | Transcriptional Regulator, GntR family (NCBI) | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.43 | AMB_RS20670 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.19 | AMB_RS18145 | | GntR family transcriptional regulator | low | > 64 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS11180 | | TrmH family RNA methyltransferase | 0.29 | ABIE41_RS20680 | | GntR family transcriptional regulator | low | > 77 |
| Azospirillum brasilense Sp245 | 0.41 | AZOBR_RS20740 | | tRNA methyltransferase | 0.25 | AZOBR_RS18000 | | hypothetical protein | low | > 97 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS00645 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.17 | HER17_RS01295 | | GntR family transcriptional regulator | low | > 75 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS00755 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.15 | DDA3937_RS16715 | | GntR family transcriptional regulator | low | > 74 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS21630 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.15 | DZA65_RS02615 | | GntR family transcriptional regulator | low | > 75 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS20615 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.15 | HGI48_RS02510 | | GntR family transcriptional regulator | low | > 71 |
| Burkholderia phytofirmans PsJN | 0.37 | BPHYT_RS02620 | | tRNA methyltransferase | 0.19 | BPHYT_RS34445 | | GntR family transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_01998 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase | 0.25 | H281DRAFT_02670 | | transcriptional regulator, GntR family | low | > 103 |
| Variovorax sp. SCN45 | 0.35 | GFF2293 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.18 | GFF6145 | | 2-aminoethylphosphonate utilization transcriptional regulator, GntR family | low | > 127 |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS23985 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.19 | ABID97_RS15845 | | GntR family transcriptional regulator | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_000669 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase | 0.19 | ABIE53_004689 | | DNA-binding GntR family transcriptional regulator | low | > 113 |
| Erwinia amylovora T8 | 0.35 | OLJFJH_05925 | | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | 0.12 | OLJFJH_18610 | | GntR family transcriptional regulator | low | > 58 |
| Escherichia coli ECRC101 | 0.35 | MCAODC_06275 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | MCAODC_16915 | ydfH | DNA-binding transcriptional regulator YdfH | low | > 87 |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_07645 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | NOLOHH_18635 | ydfH | DNA-binding transcriptional regulator YdfH | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_00093 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.12 | OHPLBJKB_02172 | | HTH-type transcriptional repressor RspR | low | > 74 |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_12385 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | KEDOAH_27420 | ydfH | DNA-binding transcriptional regulator YdfH | — | — |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_13525 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | NIAGMN_25155 | ydfH | DNA-binding transcriptional regulator YdfH | low | > 80 |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS20585 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.12 | ECOLIN_RS08815 | | DNA-binding transcriptional regulator rspR | — | — |
| Escherichia coli ECRC62 | 0.35 | BNILDI_03870 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | BNILDI_17125 | ydfH | DNA-binding transcriptional regulator YdfH | low | > 75 |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_19390 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | JDDGAC_03520 | ydfH | DNA-binding transcriptional regulator YdfH | low | > 87 |
| Escherichia coli BL21 | 0.35 | ECD_03464 | | tRNA Leu mC34,mU34 2'-O-methyltransferase, SAM-dependent | 0.12 | ECD_01499 | | transcriptional repressor for rspAB | — | — |
| Escherichia coli ECRC100 | 0.35 | OKFHMN_15765 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | OKFHMN_01010 | ydfH | DNA-binding transcriptional regulator YdfH | — | — |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_14605 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.12 | HEPCGN_26935 | ydfH | DNA-binding transcriptional regulator YdfH | low | > 88 |
| Escherichia coli BW25113 | 0.35 | b3606 | yibK | predicted rRNA methylase (NCBI) | 0.12 | b1540 | ydfH | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Shewanella amazonensis SB2B | 0.35 | Sama_3440 | | RNA methyltransferase TrmH, group 2 (RefSeq) | 0.16 | Sama_3293 | | GntR family transcriptional regulator (RefSeq) | low | > 62 |
| Dechlorosoma suillum PS | 0.35 | Dsui_1278 | | putative rRNA methylase SpoU family | 0.18 | Dsui_0520 | | transcriptional regulator | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_3934 | | rRNA methylase, putative, group 2 | 0.17 | Psest_2322 | | Transcriptional regulators | low | > 67 |
| Pseudomonas sp. SVBP6 | 0.34 | COO64_RS13315 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.28 | COO64_RS24445 | | GntR family transcriptional regulator | low | > 93 |
| Escherichia fergusonii Becca | 0.34 | EFB2_00204 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.12 | EFB2_02416 | | HTH-type transcriptional repressor RspR | low | > 86 |
| Klebsiella michiganensis M5al | 0.34 | BWI76_RS27200 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.13 | BWI76_RS15480 | | GntR family transcriptional regulator | low | > 92 |
| Enterobacter asburiae PDN3 | 0.34 | EX28DRAFT_3857 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.13 | EX28DRAFT_1946 | | Transcriptional regulators | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.34 | KDGMDA_07885 | | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | 0.12 | KDGMDA_22420 | | GntR family transcriptional regulator | low | > 95 |
| Rahnella sp. WP5 | 0.34 | EX31_RS14330 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.13 | EX31_RS21160 | | GntR family transcriptional regulator | low | > 89 |
| Pseudomonas aeruginosa PUPa3 | 0.34 | DQ20_RS50635 | trmL;go_function=tRNA | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | 0.17 | DQ20_RS44340 | | GntR family transcriptional regulator | low | > 101 |
| Pseudomonas segetis P6 | 0.34 | MPMX49_04290 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.16 | MPMX49_02629 | | putative D-xylose utilization operon transcriptional repressor | low | > 75 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_00127 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.12 | MPMX20_02098 | | HTH-type transcriptional repressor RspR | low | > 85 |
| Pseudomonas putida KT2440 | 0.33 | PP_5052 | | tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent | 0.28 | PP_3649 | | Transcriptional regulator, GntR family | low | > 96 |
| Acidovorax sp. GW101-3H11 | 0.33 | Ac3H11_3896 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.17 | Ac3H11_960 | | Transcriptional regulator, GntR family | low | > 79 |
| Pseudomonas sp. BP01 | 0.33 | JOY50_RS09440 | trmL | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.28 | JOY50_RS07705 | | GntR family transcriptional regulator | low | > 84 |
| Herbaspirillum seropedicae SmR1 | 0.33 | HSERO_RS20815 | | tRNA methyltransferase | 0.17 | HSERO_RS13485 | | AsnC family transcriptional regulator | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS01855 | | rRNA methylase | 0.20 | RR42_RS30405 | | GntR family transcriptional regulator | low | > 128 |
| Pseudomonas aeruginosa PA14 | 0.33 | IKLFDK_27870 | | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | 0.17 | IKLFDK_03450 | | GntR family transcriptional regulator | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.33 | DY961_RS11465 | trmL;go_function=tRNA | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | 0.17 | DY961_RS08510 | | GntR family transcriptional regulator | low | > 100 |
| Pseudomonas sp. RS175 | 0.33 | PFR28_04942 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.16 | PFR28_02929 | | HTH-type transcriptional repressor GlaR | low | > 88 |
| Pseudomonas simiae WCS417 | 0.33 | PS417_01625 | | rRNA methylase | 0.15 | PS417_21085 | | GntR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_09750 | | rRNA methylase | 0.29 | AO356_25750 | | GntR family transcriptional regulator | low | > 104 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF684 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.20 | GFF172 | | Transcriptional regulator, GntR family | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_3828 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.16 | Pf6N2E2_6060 | | Propionate catabolism operon transcriptional regulator of GntR family [predicted] | low | > 103 |
| Shewanella loihica PV-4 | 0.32 | Shew_3577 | | RNA methyltransferase (RefSeq) | 0.13 | Shew_0280 | | GntR family transcriptional regulator (RefSeq) | low | > 60 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_1613 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.16 | Pf1N1B4_3818 | | Propionate catabolism operon transcriptional regulator of GntR family [predicted] | low | > 87 |
| Ralstonia solanacearum IBSBF1503 | 0.32 | RALBFv3_RS10925 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.14 | RALBFv3_RS03230 | | GntR family transcriptional regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.32 | ABZR87_RS06775 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.19 | ABZR87_RS08175 | | GntR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.32 | UW163_RS02655 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.14 | UW163_RS10495 | | GntR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_12135 | | rRNA methylase | 0.16 | AO353_00905 | | GntR family transcriptional regulator | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | 0.29 | Psyr_2405 | | transcriptional regulator, GntR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | 0.29 | Psyr_2405 | | transcriptional regulator, GntR family | low | > 86 |
| Pseudomonas sp. S08-1 | 0.32 | OH686_14675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.18 | OH686_01695 | | Propionate catabolism operon transcriptional regulator of GntR family | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.32 | PfGW456L13_349 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.16 | PfGW456L13_4119 | | Propionate catabolism operon transcriptional regulator of GntR family [predicted] | low | > 87 |
| Pseudomonas orientalis W4I3 | 0.32 | QF045_RS04695 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.28 | QF045_RS13350 | | GntR family transcriptional regulator | low | > 93 |
| Pantoea agglomerans CFBP13505 P0401 | 0.31 | PagCFBP13505_RS18595 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.15 | PagCFBP13505_RS00920 | | GntR family transcriptional regulator | low | > 74 |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_00545 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.29 | GEMAOFIL_02483 | | HTH-type transcriptional repressor NanR | low | > 96 |
| Ralstonia solanacearum PSI07 | 0.31 | RPSI07_RS22385 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.13 | RPSI07_RS08675 | | GntR family transcriptional regulator | low | > 81 |
| Pseudomonas sp. DMC3 | 0.31 | GFF4085 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.29 | GFF3045 | | HTH-type transcriptional repressor NanR | low | > 89 |
| Pantoea sp. MT58 | 0.31 | IAI47_00750 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.15 | IAI47_06815 | | GntR family transcriptional regulator | low | > 76 |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.29 | PFLU_RS11525 | | GntR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.29 | PFLU_RS11525 | | GntR family transcriptional regulator | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS01765 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.13 | RS_RS16415 | | GntR family transcriptional regulator | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.30 | QEN71_RS01475 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.29 | QEN71_RS37050 | | GntR family transcriptional regulator | low | > 153 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.277.1 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.14 | Xcc-8004.744.1 | | Predicted regulator PutR for proline utilization, GntR family | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS14245 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.14 | ABCV34_RS01175 | | GntR family transcriptional regulator | low | > 48 |
Not shown: 30 genomes with orthologs for GFF3757 only; 4 genomes with orthologs for GFF548 only