| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF1178 | | ABC transporter, permease protein, putative | 1.0 | GFF5449 | | ATP-dependent 23S rRNA helicase DbpA | 0.51 | 9 |
| Acidovorax sp. GW101-3H11 | 0.68 | Ac3H11_3795 | | ABC transporter, permease protein, putative | 0.79 | Ac3H11_4671 | | ATP-dependent 23S rRNA helicase DbpA | low | > 79 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS07595 | | FtsX-like permease family protein | 0.80 | ABID97_RS02340 | | ATP-dependent RNA helicase DbpA | low | > 91 |
| Variovorax sp. SCN45 | 0.64 | GFF5663 | | ABC transporter, fused permease protein | 0.77 | GFF7138 | | ATP-dependent 23S rRNA helicase DbpA | low | > 127 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS14190 | | ABC transporter permease | 0.72 | RPSI07_RS20905 | | ATP-dependent RNA helicase DbpA | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS10490 | | ABC transporter permease | 0.72 | RS_RS03120 | | ATP-dependent RNA helicase DbpA | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS15020 | | ABC transporter permease | 0.70 | ABZR87_RS19855 | | ATP-dependent RNA helicase DbpA | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_04537 | | putative ABC transport system permease protein | 0.72 | H281DRAFT_02294 | | ATP-dependent RNA helicase DbpA | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_001560 | | putative ABC transport system permease protein | 0.72 | ABIE53_000368 | | ATP-independent RNA helicase DbpA | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS06480 | | ABC transporter permease | 0.71 | BPHYT_RS00150 | | DEAD/DEAH box helicase | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.38 | RR42_RS05370 | | ABC transporter permease | 0.73 | RR42_RS00295 | | DEAD/DEAH box helicase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.37 | QEN71_RS24320 | | ABC transporter permease | 0.73 | QEN71_RS00065 | | ATP-dependent RNA helicase DbpA | low | > 153 |
| Dechlorosoma suillum PS | 0.36 | Dsui_2415 | | putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.65 | Dsui_2946 | | DNA/RNA helicase, superfamily II | low | > 51 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_00956 | | hypothetical protein | 0.61 | PFR28_04172 | | ATP-dependent RNA helicase DbpA | low | > 88 |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS18495 | | FtsX-like permease family protein | 0.47 | ABIE51_RS14930 | | ATP-dependent RNA helicase DbpA | low | > 62 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_08395 | | ABC transporter permease | 0.60 | PS417_26370 | | RNA helicase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_2478 | | FIG00809136: hypothetical protein | 0.61 | Pf6N2E2_4673 | | ATP-dependent 23S rRNA helicase DbpA | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.27 | AO356_03235 | | ABC transporter permease | 0.61 | AO356_13770 | | ATP-dependent RNA helicase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.27 | Pf1N1B4_297 | | FIG00809136: hypothetical protein | 0.60 | Pf1N1B4_2412 | | ATP-dependent 23S rRNA helicase DbpA | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS08345 | | ABC transporter permease | 0.60 | PFLU_RS28020 | | ATP-dependent RNA helicase DbpA | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.27 | PfGW456L13_2217 | | FIG00809136: hypothetical protein | 0.60 | PfGW456L13_1078 | | ATP-dependent 23S rRNA helicase DbpA | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS08345 | | ABC transporter permease | 0.60 | PFLU_RS28020 | | ATP-dependent RNA helicase DbpA | 0.42 | 36 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_2066 | | Protein of unknown function DUF214:Fimbrial assembly | 0.60 | Psyr_0516 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_2066 | | Protein of unknown function DUF214:Fimbrial assembly | 0.60 | Psyr_0516 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_18995 | | ABC transporter permease | 0.60 | AO353_07850 | | ATP-dependent RNA helicase | low | > 101 |
| Alteromonas macleodii MIT1002 | 0.26 | MIT1002_01416 | | outer membrane-specific lipoprotein transporter subunit LolE | 0.42 | MIT1002_03748 | | ATP-independent RNA helicase DbpA | — | — |
| Pseudomonas putida KT2440 | 0.25 | PP_2316 | | putative ABC transporter, permease protein | 0.60 | PP_4952 | | ATP-dependent RNA helicase, specific for 23S rRNA | low | > 96 |
| Pseudomonas sp. S08-1 | 0.25 | OH686_01800 | | ABC transporter, fused permease protein | 0.60 | OH686_14770 | | ATP-dependent 23S rRNA helicase DbpA | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.25 | Psest_2338 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.61 | Psest_0344 | | Superfamily II DNA and RNA helicases | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.25 | B158DRAFT_2226 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.50 | B158DRAFT_2047 | | ATP-dependent RNA helicase DbpA (EC 5.99.1.-) | low | > 40 |
| Rahnella sp. WP5 | 0.22 | EX31_RS22615 | | ABC transporter permease | 0.52 | EX31_RS24740 | | ATP-dependent RNA helicase DbpA | low | > 89 |
| Escherichia coli ECRC62 | 0.22 | BNILDI_22375 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | BNILDI_18025 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli ECRC99 | 0.22 | KEDOAH_20005 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | KEDOAH_26595 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli ECRC98 | 0.22 | JDDGAC_11610 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | JDDGAC_04720 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_06595 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | HEPCGN_26000 | dbpA | ATP-dependent RNA helicase DbpA | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.22 | OHPLBJKB_03178 | | hypothetical protein | 0.49 | OHPLBJKB_02338 | | ATP-dependent RNA helicase DbpA | low | > 73 |
| Escherichia coli BW25113 | 0.22 | b0496 | ybbP | predicted inner membrane protein (NCBI) | 0.49 | b1343 | dbpA | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | low | > 76 |
| Klebsiella michiganensis M5al | 0.22 | BWI76_RS06955 | | sugar ABC transporter permease | 0.49 | BWI76_RS12705 | | ATP-dependent RNA helicase | low | > 92 |
| Escherichia coli ECOR27 | 0.22 | NOLOHH_00955 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | NOLOHH_19875 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli ECRC102 | 0.22 | NIAGMN_06015 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | NIAGMN_26330 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Enterobacter sp. TBS_079 | 0.22 | MPMX20_01094 | | hypothetical protein | 0.49 | MPMX20_02441 | | ATP-dependent RNA helicase DbpA | low | > 85 |
| Escherichia coli ECRC101 | 0.22 | OKFHMN_07965 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | OKFHMN_02160 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Enterobacter asburiae PDN3 | 0.22 | EX28DRAFT_2463 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.49 | EX28DRAFT_1006 | | Superfamily II DNA and RNA helicases | low | > 76 |
| Escherichia coli ECRC101 | 0.22 | MCAODC_27180 | ybbP | Uncharacterized ABC transporter permease YbbP | 0.49 | MCAODC_16095 | dbpA | ATP-dependent RNA helicase DbpA | — | — |
| Escherichia coli BL21 | 0.22 | ECD_00447 | | putative ABC transporter permease | 0.49 | ECD_01320 | | ATP-dependent RNA helicase, specific for 23S rRNA | low | > 60 |
| Escherichia fergusonii Becca | 0.22 | EFB2_03559 | | hypothetical protein | 0.49 | EFB2_02584 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.22 | HER17_RS15490 | | ABC transporter permease | 0.52 | HER17_RS06775 | | ATP-dependent RNA helicase DbpA | low | > 75 |
| Escherichia coli Nissle 1917 | 0.22 | ECOLIN_RS02930 | | putative ABC transporter permease subunit YbbP | 0.50 | ECOLIN_RS08060 | | ATP-dependent RNA helicase DbpA | — | — |
| Pantoea sp. MT58 | 0.21 | IAI47_14360 | | ABC transporter permease | 0.51 | IAI47_15055 | | ATP-dependent RNA helicase DbpA | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.21 | GFF4414 | | FIG00809136: hypothetical protein | 0.49 | GFF2649 | | ATP-dependent 23S rRNA helicase DbpA | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS15255 | | ABC transporter permease | 0.48 | LU632_RS11995 | dbpA | ATP-dependent RNA helicase DbpA | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.21 | Xcc-8004.4289.1 | | ABC transporter, permease protein, putative | 0.45 | Xcc-8004.2274.1 | | ATP-dependent 23S rRNA helicase DbpA | low | > 74 |
| Shewanella amazonensis SB2B | 0.21 | Sama_1487 | | ABC transporter, permease, putative (RefSeq) | 0.50 | Sama_0752 | | ATP-dependent RNA helicase DbpA (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.20 | IAI46_05355 | | ABC transporter permease | 0.54 | IAI46_14765 | | ATP-dependent RNA helicase DbpA | low | > 86 |
| Shewanella sp. ANA-3 | 0.20 | Shewana3_1539 | | hypothetical protein (RefSeq) | 0.51 | Shewana3_3384 | | ATP-dependent RNA helicase DbpA (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.20 | HP15_1386 | | ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | 0.51 | HP15_1329 | | DEAD/DEAH box helicase domain protein | low | > 73 |
| Dickeya dianthicola ME23 | 0.20 | DZA65_RS06365 | | ABC transporter permease | 0.50 | DZA65_RS11470 | | ATP-dependent RNA helicase DbpA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.19 | HGI48_RS06020 | | ABC transporter permease | 0.51 | HGI48_RS11065 | | ATP-dependent RNA helicase DbpA | low | > 71 |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS05970 | | ABC transporter permease | 0.50 | DDA3937_RS11045 | | ATP-dependent RNA helicase DbpA | low | > 74 |
| Shewanella oneidensis MR-1 | 0.19 | SO2926 | | ABC transporter, permease, putative (NCBI ptt file) | 0.50 | SO0897 | dbpA | ATP-dependent RNA helicase DbpA (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.19 | Shew_2401 | | hypothetical protein (RefSeq) | 0.52 | Shew_0598 | | ATP-dependent RNA helicase DbpA (RefSeq) | low | > 60 |
| Rhodanobacter denitrificans MT42 | 0.17 | LRK55_RS03875 | | FtsX-like permease family protein | 0.49 | LRK55_RS09695 | | ATP-dependent RNA helicase DbpA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.17 | LRK54_RS04105 | | FtsX-like permease family protein | 0.49 | LRK54_RS10055 | | ATP-dependent RNA helicase DbpA | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.17 | OKGIIK_10965 | ybbP | ABC transporter permease | 0.49 | OKGIIK_16320 | dbpA | ATP-dependent RNA helicase DbpA | low | > 52 |
| Vibrio cholerae E7946 ATCC 55056 | 0.16 | CSW01_18080 | | ABC transporter permease | 0.51 | CSW01_12980 | | ATP-dependent RNA helicase DbpA | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.15 | CA264_05670 | | ABC transporter permease | 0.35 | CA264_06050 | | ATP-dependent RNA helicase | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.10 | ABZR86_RS10175 | | FtsX-like permease family protein | 0.50 | ABZR86_RS05195 | | ATP-dependent RNA helicase DbpA | low | > 74 |
Not shown: 20 genomes with orthologs for GFF1178 only; 1 genomes with orthologs for GFF5449 only