Conservation of cofitness between PS417_03560 and PS417_26370 in Pseudomonas simiae WCS417

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_03560 GTP-binding protein 1.0 PS417_26370 RNA helicase 0.32 11
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS03610 redox-regulated ATPase YchF 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS03610 redox-regulated ATPase YchF 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_14740 GTP-binding protein 0.91 AO353_07850 ATP-dependent RNA helicase low > 101
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_16450 GTP-binding protein 0.95 AO356_13770 ATP-dependent RNA helicase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_0941 Conserved hypothetical protein 92 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_0941 Conserved hypothetical protein 92 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas sp. RS175 0.96 PFR28_03664 Ribosome-binding ATPase YchF 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA low > 88
Pseudomonas putida KT2440 0.93 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA low > 96
Pseudomonas sp. S08-1 0.92 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA low > 80
Pseudomonas stutzeri RCH2 0.90 Psest_1103 GTP-binding protein YchF 0.84 Psest_0344 Superfamily II DNA and RNA helicases low > 67
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.59 HP15_1329 DEAD/DEAH box helicase domain protein low > 73
Shewanella sp. ANA-3 0.72 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.72 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) low > 76
Escherichia coli ECRC62 0.72 BNILDI_18805 ychF redox-regulated ATPase YchF 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA — —
Shewanella amazonensis SB2B 0.71 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) low > 62
Escherichia coli Nissle 1917 0.71 ECOLIN_RS07280 redox-regulated ATPase YchF 0.53 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC101 0.71 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECOR38 0.71 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC101 0.71 MCAODC_21850 ychF redox-regulated ATPase YchF 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia fergusonii Becca 0.71 EFB2_02724 Ribosome-binding ATPase YchF 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA low > 86
Escherichia coli BW25113 0.71 b1203 ychF translation-associated GTPase (NCBI) 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA low > 73
Escherichia coli ECRC102 0.71 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC98 0.71 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECOR27 0.71 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC99 0.71 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli BL21 0.71 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA — —
Erwinia tracheiphila SCR3 0.71 LU632_RS13950 ychF redox-regulated ATPase YchF 0.50 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA low > 78
Dickeya dianthicola ME23 0.71 DZA65_RS11435 redox-regulated ATPase YchF 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS11035 redox-regulated ATPase YchF 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA low > 74
Dickeya dianthicola 67-19 0.71 HGI48_RS10975 redox-regulated ATPase YchF 0.53 HGI48_RS11065 ATP-dependent RNA helicase DbpA low > 71
Pantoea sp. MT58 0.71 IAI47_11310 redox-regulated ATPase YchF 0.50 IAI47_15055 ATP-dependent RNA helicase DbpA low > 76
Pectobacterium carotovorum WPP14 0.70 HER17_RS10445 redox-regulated ATPase YchF 0.57 HER17_RS06775 ATP-dependent RNA helicase DbpA low > 75
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2052 GTP-binding protein YchF 0.50 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) low > 40
Klebsiella michiganensis M5al 0.69 BWI76_RS17485 GTP-binding protein YchF 0.53 BWI76_RS12705 ATP-dependent RNA helicase — —
Lysobacter sp. OAE881 0.69 ABIE51_RS05745 redox-regulated ATPase YchF 0.50 ABIE51_RS14930 ATP-dependent RNA helicase DbpA low > 62
Enterobacter sp. TBS_079 0.69 MPMX20_02645 Ribosome-binding ATPase YchF 0.52 MPMX20_02441 ATP-dependent RNA helicase DbpA low > 85
Alteromonas macleodii MIT1002 0.69 MIT1002_01504 Ribosome-binding ATPase YchF 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA — —
Rahnella sp. WP5 0.69 EX31_RS07380 redox-regulated ATPase YchF 0.55 EX31_RS24740 ATP-dependent RNA helicase DbpA low > 89
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_10875 redox-regulated ATPase YchF 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA low > 62
Shewanella loihica PV-4 0.69 Shew_2919 translation-associated GTPase (RefSeq) 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS22010 redox-regulated ATPase YchF 0.54 ABZR86_RS05195 ATP-dependent RNA helicase DbpA low > 74
Enterobacter asburiae PDN3 0.69 EX28DRAFT_0821 GTP-binding protein YchF 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases — —
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.50 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA low > 74
Serratia liquefaciens MT49 0.68 IAI46_10240 redox-regulated ATPase YchF 0.58 IAI46_14765 ATP-dependent RNA helicase DbpA — —
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS17445 GTP-binding protein YchF 0.58 BPHYT_RS00150 DEAD/DEAH box helicase low > 109
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_10565 Ribosome-binding ATPase YchF 0.52 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA low > 52
Paraburkholderia graminis OAS925 0.67 ABIE53_003650 GTP-binding protein YchF 0.58 ABIE53_000368 ATP-independent RNA helicase DbpA low > 113
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_05705 hypothetical protein 0.58 H281DRAFT_02294 ATP-dependent RNA helicase DbpA low > 103
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS03675 redox-regulated ATPase YchF 0.52 LRK54_RS10055 ATP-dependent RNA helicase DbpA low > 59
Rhodanobacter denitrificans MT42 0.66 LRK55_RS03425 redox-regulated ATPase YchF 0.52 LRK55_RS09695 ATP-dependent RNA helicase DbpA low > 63
Castellaniella sp019104865 MT123 0.66 ABCV34_RS09215 redox-regulated ATPase YchF 0.53 ABCV34_RS04635 ATP-dependent RNA helicase DbpA — —
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS27600 redox-regulated ATPase YchF 0.59 QEN71_RS00065 ATP-dependent RNA helicase DbpA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.60 GFF5449 ATP-dependent 23S rRNA helicase DbpA low > 90
Ralstonia solanacearum GMI1000 0.65 RS_RS14520 redox-regulated ATPase YchF 0.59 RS_RS03120 ATP-dependent RNA helicase DbpA low > 80
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS02220 redox-regulated ATPase YchF 0.58 ABZR87_RS19855 ATP-dependent RNA helicase DbpA low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS18365 GTP-binding protein 0.58 RR42_RS00295 DEAD/DEAH box helicase low > 128
Variovorax sp. SCN45 0.64 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.55 GFF7138 ATP-dependent 23S rRNA helicase DbpA low > 127
Ralstonia solanacearum PSI07 0.64 RPSI07_RS10660 redox-regulated ATPase YchF 0.59 RPSI07_RS20905 ATP-dependent RNA helicase DbpA low > 81
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.56 Ac3H11_4671 ATP-dependent 23S rRNA helicase DbpA — —
Variovorax sp. OAS795 0.63 ABID97_RS24750 redox-regulated ATPase YchF 0.58 ABID97_RS02340 ATP-dependent RNA helicase DbpA low > 91
Dechlorosoma suillum PS 0.63 Dsui_1039 GTP-binding protein YchF 0.57 Dsui_2946 DNA/RNA helicase, superfamily II — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.59 CA264_07495 GTP-binding protein YchF 0.38 CA264_06050 ATP-dependent RNA helicase low > 74

Not shown: 34 genomes with orthologs for PS417_03560 only; 1 genomes with orthologs for PS417_26370 only