| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Variovorax sp. SCN45 | 1.0 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 1.0 | GFF5041 | | Malonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.18) | 0.87 | 6 |
| Variovorax sp. OAS795 | 0.96 | ABID97_RS20695 | | metalloprotease PmbA | 0.90 | ABID97_RS19485 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.81 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | Ac3H11_4340 | | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.75 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.82 | GFF1895 | | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS09265 | | peptidase C69 | 0.66 | HSERO_RS24005 | | methylmalonate-semialdehyde dehydrogenase | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.60 | ABCV34_RS10610 | | metalloprotease PmbA | 0.70 | ABCV34_RS07430 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 48 |
| Ralstonia solanacearum UW163 | 0.60 | UW163_RS15845 | | metalloprotease PmbA | 0.68 | UW163_RS20405 | | methylmalonate-semialdehyde dehydrogenase (CoA acylating) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.60 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.68 | RALBFv3_RS18725 | | methylmalonate-semialdehyde dehydrogenase (CoA acylating) | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS19505 | | metalloprotease PmbA | 0.69 | RPSI07_RS04870 | | methylmalonate-semialdehyde dehydrogenase (CoA acylating) | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS09660 | | metalloprotease PmbA | 0.68 | ABZR87_RS19665 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.59 | ABIE53_003116 | | PmbA protein | 0.72 | ABIE53_005233 | | malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS14750 | | peptidase PMbA | 0.74 | RR42_RS34225 | | methylmalonate-semialdehyde dehydrogenase | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.72 | H281DRAFT_03264 | | methylmalonate-semialdehyde dehydrogenase [acylating] | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS04270 | | metalloprotease PmbA | 0.76 | QEN71_RS37655 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.58 | BPHYT_RS14705 | | peptidase C69 | 0.72 | BPHYT_RS28825 | | methylmalonate-semialdehyde dehydrogenase | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS04700 | | metalloprotease PmbA | 0.71 | RS_RS12715 | | methylmalonate-semialdehyde dehydrogenase (CoA acylating) | low | > 80 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_00163 | | Metalloprotease PmbA | 0.59 | PFR28_05263 | | Putative 3-oxopropanoate dehydrogenase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.64 | Pf6N2E2_515 | | malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_07085 | | peptidase PmbA | 0.64 | AO356_23175 | | malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) | low | > 104 |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS20090 | | metalloprotease PmbA | 0.54 | HER17_RS14440 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS04350 | | metalloprotease PmbA | 0.74 | PFLU_RS11260 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | 0.54 | 73 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS04350 | | metalloprotease PmbA | 0.74 | PFLU_RS11260 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 109 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.55 | EX28DRAFT_0147 | | methylmalonic acid semialdehyde dehydrogenase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_00517 | | Metalloprotease PmbA | 0.56 | MPMX20_03375 | | Putative 3-oxopropanoate dehydrogenase | low | > 85 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00230 | | peptidase PmbA | 0.56 | MIT1002_03462 | | Methylmalonate-semialdehyde dehydrogenase [acylating] | low | > 70 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | GFF888 | | Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) | low | > 78 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_04295 | | peptidase PmbA | 0.74 | PS417_10925 | | malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) | low | > 88 |
| Pseudomonas putida KT2440 | 0.44 | PP_0942 | | regulatory protease | 0.59 | PP_0597 | | methylmalonate-semialdehyde dehydrogenase | low | > 96 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_22575 | | metalloprotease PmbA | 0.55 | IAI46_02640 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | 0.50 | 70 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.65 | Pf1N1B4_4277 | | Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.44 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.58 | OH686_07305 | | methylmalonate-semialdehyde dehydrogenase (acylating) | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.64 | Psyr_3271 | | methylmalonate-semialdehyde dehydrogenase (acylating) | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.64 | Psyr_3271 | | methylmalonate-semialdehyde dehydrogenase (acylating) | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.58 | PfGW456L13_2 | | Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) | low | > 87 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS02850 | | metalloprotease PmbA | 0.53 | BWI76_RS03070 | | Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (from data) | low | > 92 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_05205 | | peptidase PmbA | 0.65 | AO353_21350 | | methylmalonate-semialdehyde dehydrogenase | low | > 101 |
| Pantoea sp. MT58 | 0.43 | IAI47_02765 | | metalloprotease PmbA | 0.54 | IAI47_01465 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 76 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS01500 | | metalloprotease PmbA | 0.54 | DDA3937_RS03670 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 74 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.61 | Shewana3_3107 | | methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq) | low | > 73 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS01415 | | metalloprotease PmbA | 0.55 | HGI48_RS03730 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 71 |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS01480 | | metalloprotease PmbA | 0.54 | DZA65_RS03855 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 75 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0482 | | PmbA protein (RefSeq) | 0.62 | Sama_2650 | | methylmalonate-semialdehyde dehydrogenase (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.53 | LU632_RS02350 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.57 | Psest_3781 | | methylmalonic acid semialdehyde dehydrogenase | low | > 67 |
| Shewanella loihica PV-4 | 0.41 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.61 | Shew_0965 | | methylmalonate-semialdehyde dehydrogenase (RefSeq) | low | > 60 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.58 | AZOBR_RS22500 | | methylmalonate-semialdehyde dehydrogenase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_01886 | | Metalloprotease PmbA | 0.65 | MPMX19_04040 | | Putative 3-oxopropanoate dehydrogenase | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_c33480 | | protein PmbA | 0.50 | PGA1_c17300 | | methylmalonate-semialdehyde dehydrogenase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.53 | CCNA_02357 | | methylmalonic acid semialdehyde dehydrogenase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.53 | CCNA_02357 | | methylmalonic acid semialdehyde dehydrogenase | low | > 66 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc00897 | | PMBA protein | 0.56 | SMc00781 | | malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.55 | Ga0059261_3677 | | methylmalonic acid semialdehyde dehydrogenase | low | > 68 |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.51 | Dshi_1747 | | methylmalonate-semialdehyde dehydrogenase (RefSeq) | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.27 | TX73_005930 | | TldD/PmbA family protein | 0.58 | TX73_017860 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 86 |
| Rhodospirillum rubrum S1H | 0.26 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.56 | Rru_A1542 | | Methylmalonate-semialdehyde dehydrogenase (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.26 | A4249_RS09195 | | TldD/PmbA family protein | 0.55 | A4249_RS03580 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 48 |
| Rhizobium sp. OAE497 | 0.26 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.59 | ABIE40_RS03335 | | CoA-acylating methylmalonate-semialdehyde dehydrogenase | low | > 107 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.59 | Atu0205 | | methylmalonate-semialdehyde dehydrogenase | low | > 89 |
Not shown: 29 genomes with orthologs for GFF4697 only; 3 genomes with orthologs for GFF5041 only