Conservation of cofitness between GFF2462 and GFF3996 in Hydrogenophaga sp. GW460-11-11-14-LB1

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 1.0 GFF3996 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.58 20
Variovorax sp. SCN45 0.61 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.53 GFF439 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) low > 127
Acidovorax sp. GW101-3H11 0.56 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.46 Ac3H11_995 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase 0.22 H281DRAFT_00144 adenosylcobinamide-phosphate synthase (EC 6.3.1.10) — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.21 QEN71_RS25105 adenosylcobinamide-phosphate synthase CbiB 0.35 122
Paraburkholderia graminis OAS925 0.43 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase 0.22 ABIE53_001253 adenosylcobinamide-phosphate synthase low > 113
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS16855 16S rRNA methyltransferase 0.24 BPHYT_RS04890 cobalamin biosynthesis protein CobD low > 109
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS17590 16S rRNA methyltransferase 0.17 RR42_RS16085 cobalamin biosynthesis protein CobD low > 128
Ralstonia solanacearum PSI07 0.39 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.25 RPSI07_RS12915 cobalamin biosynthesis protein low > 81
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 RALBFv3_RS04455 cobalamin biosynthesis protein low > 76
Ralstonia solanacearum UW163 0.39 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 UW163_RS09215 cobalamin biosynthesis protein — —
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.24 ABZR87_RS00050 adenosylcobinamide-phosphate synthase CbiB low > 80
Ralstonia solanacearum GMI1000 0.39 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.24 RS_RS12010 cobalamin biosynthesis protein low > 80
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS07110 16S rRNA methyltransferase 0.21 HSERO_RS13240 cobalamin biosynthesis protein CobD 0.28 7
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.24 Pf1N1B4_3709 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.23 Psyr_3678 adenosylcobinamide-phosphate synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.23 Psyr_3678 adenosylcobinamide-phosphate synthase low > 86
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_08050 16S rRNA methyltransferase 0.23 AO353_02625 cobalamin biosynthesis protein CobD low > 101
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_13565 16S rRNA methyltransferase 0.23 AO356_19150 cobalamin biosynthesis protein CobD low > 104
Pseudomonas stutzeri RCH2 0.35 Psest_0305 RNA methyltransferase, RsmE family 0.22 Psest_3010 cobalamin biosynthesis protein CobD low > 67
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.23 Pf6N2E2_5740 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) low > 103
Dechlorosoma suillum PS 0.34 Dsui_1568 RNA methyltransferase, RsmE family 0.23 Dsui_0541 cobalamin biosynthesis protein CobD — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.24 PfGW456L13_4240 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) low > 87
Pseudomonas sp. S08-1 0.33 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.22 OH686_04975 cobalamin biosynthesis protein CobD low > 80
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 ABZR86_RS10910 adenosylcobinamide-phosphate synthase CbiB low > 74
Pseudomonas sp. RS175 0.33 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.22 PFR28_03206 Cobalamin biosynthesis protein CobD low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.18 GFF3951 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) low > 78
Pseudomonas fluorescens SBW25 0.33 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 PFLU_RS22015 cobalamin biosynthesis protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 PFLU_RS22015 cobalamin biosynthesis protein low > 109
Pseudomonas simiae WCS417 0.33 PS417_26545 16S rRNA methyltransferase 0.23 PS417_20050 cobalamin biosynthesis protein CobD low > 88
Klebsiella michiganensis M5al 0.32 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.18 BWI76_RS23085 adenosylcobinamide-phosphate synthase low > 92
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.10 CSW01_12050 adenosylcobinamide-phosphate synthase low > 62
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.24 OKGIIK_05490 cbiB adenosylcobinamide-phosphate synthase CbiB low > 52
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.21 Xcc-8004.1395.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) — —
Lysobacter sp. OAE881 0.26 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 ABIE51_RS04955 adenosylcobinamide-phosphate synthase CbiB low > 62
Azospirillum sp. SherDot2 0.22 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.21 MPMX19_01266 Cobalamin biosynthesis protein CbiB — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_3099 protein of unknown function DUF558 (RefSeq) 0.21 Dshi_0165 cobalamin biosynthesis protein CobD (RefSeq) — —
Azospirillum brasilense Sp245 0.19 AZOBR_RS11890 16S rRNA methyltransferase 0.22 AZOBR_RS10235 cobalamin biosynthesis protein CobD low > 97
Bosea sp. OAE506 0.19 ABIE41_RS23100 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.19 ABIE41_RS01755 adenosylcobinamide-phosphate synthase CbiB — —
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.26 HMPREF1058_RS01385 cobalamin biosynthesis protein CobD low > 67
Phaeobacter inhibens DSM 17395 0.19 PGA1_c02950 RNA methyltransferase-like protein 0.25 PGA1_c00820 putative cobalamin biosynthesis protein CobD — —
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0806 hypothetical protein 0.15 Synpcc7942_1441 cobD cobalamin biosynthesis protein — —
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_0807 RNA methyltransferase, RsmE family 0.20 Ga0059261_0629 cobalamin biosynthesis protein CobD low > 68
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS18150 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.25 ABI39_RS15670 cobalamin biosynthesis protein CobD low > 72
Rhodopseudomonas palustris CGA009 0.18 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.22 TX73_003720 adenosylcobinamide-phosphate synthase CbiB — —
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.23 HMPREF1181_RS15670 cobalamin biosynthesis protein CobD low > 56
Rhizobium sp. OAE497 0.16 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.20 ABIE40_RS11095 adenosylcobinamide-phosphate synthase CbiB low > 107
Desulfovibrio vulgaris Hildenborough JW710 0.16 DVU1685 conserved hypothetical protein TIGR00046 (TIGR) 0.21 DVU2237 cbiB cobalamin biosynthesis protein CobD, putative (TIGR) low > 55
Magnetospirillum magneticum AMB-1 0.14 AMB_RS01240 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.19 AMB_RS01490 cobalamin biosynthesis protein — —
Rhodospirillum rubrum S1H 0.14 Rru_A0571 hypothetical protein (NCBI) 0.21 Rru_A3382 Cobalamin biosynthesis protein CbiB (NCBI) low > 58

Not shown: 47 genomes with orthologs for GFF2462 only; 5 genomes with orthologs for GFF3996 only