Conservation of cofitness between Psest_4191 and Psest_3810 in Pseudomonas stutzeri RCH2

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_4191 Transcriptional regulator 1.0 Psest_3810 orotate phosphoribosyltransferase 0.30 7
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.81 Pf6N2E2_4370 Orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_0202 transcriptional regulator, LysR family 0.86 Psyr_0216 orotate phosphoribosyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_0202 transcriptional regulator, LysR family 0.86 Psyr_0216 orotate phosphoribosyltransferase — —
Pseudomonas putida KT2440 0.88 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.81 PP_5291 Orotate phosphoribosyltransferase — —
Pseudomonas simiae WCS417 0.87 PS417_27865 LysR family transcriptional regulator 0.80 PS417_27795 orotate phosphoribosyltransferase low > 88
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12385 LysR family transcriptional regulator 0.80 AO356_12520 orotate phosphoribosyltransferase low > 104
Pseudomonas fluorescens SBW25 0.87 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.80 PFLU_RS29475 orotate phosphoribosyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.80 PFLU_RS29475 orotate phosphoribosyltransferase — —
Pseudomonas sp. RS175 0.86 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.85 PFR28_04417 Orotate phosphoribosyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09315 LysR family transcriptional regulator 0.81 AO353_09245 orotate phosphoribosyltransferase — —
Pseudomonas sp. S08-1 0.86 OH686_13510 Hydrogen peroxide-inducible genes activator 0.86 OH686_13590 Orotate phosphoribosyltransferase low > 80
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.81 PfGW456L13_788 Orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.81 Pf1N1B4_2120 Orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Marinobacter adhaerens HP15 0.64 HP15_308 oxidative stress regulatory protein OxyR 0.67 HP15_298 orotate phosphoribosyltransferase low > 73
Dechlorosoma suillum PS 0.54 Dsui_0823 transcriptional regulator 0.59 Dsui_0873 orotate phosphoribosyltransferase — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS03575 LysR substrate-binding domain-containing protein 0.59 ABCV34_RS10890 orotate phosphoribosyltransferase — —
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0567 Transcriptional regulator 0.64 B158DRAFT_0786 orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Ralstonia solanacearum UW163 0.52 UW163_RS08020 hydrogen peroxide-inducible genes activator 0.53 UW163_RS03505 orotate phosphoribosyltransferase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator 0.53 RALBFv3_RS10075 orotate phosphoribosyltransferase — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS11690 hydrogen peroxide-inducible genes activator 0.53 RPSI07_RS23295 orotate phosphoribosyltransferase — —
Ralstonia solanacearum GMI1000 0.51 RS_RS13470 hydrogen peroxide-inducible genes activator 0.53 RS_RS00685 orotate phosphoribosyltransferase — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS01255 LysR substrate-binding domain-containing protein 0.53 ABZR87_RS05590 orotate phosphoribosyltransferase low > 80
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS18935 LysR family transcriptional regulator 0.58 HSERO_RS23380 orotate phosphoribosyltransferase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS17385 LysR family transcriptional regulator 0.56 RR42_RS01225 orotate phosphoribosyltransferase — —
Variovorax sp. SCN45 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR 0.51 GFF5065 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 127
Variovorax sp. OAS795 0.46 ABID97_RS01570 LysR substrate-binding domain-containing protein 0.50 ABID97_RS03910 orotate phosphoribosyltransferase low > 91
Acidovorax sp. GW101-3H11 0.45 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.52 Ac3H11_3341 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2803 Hydrogen peroxide-inducible genes activator 0.52 GFF1882 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 90
Dickeya dianthicola 67-19 0.37 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.70 HGI48_RS00680 orotate phosphoribosyltransferase low > 71
Dickeya dianthicola ME23 0.37 DZA65_RS21450 DNA-binding transcriptional regulator OxyR 0.71 DZA65_RS00735 orotate phosphoribosyltransferase low > 75
Escherichia coli ECRC62 0.37 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR 0.71 BNILDI_04035 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli ECRC98 0.37 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR 0.71 JDDGAC_19225 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator 0.71 OHPLBJKB_00060 Orotate phosphoribosyltransferase low > 73
Dickeya dadantii 3937 0.37 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR 0.73 DDA3937_RS20535 orotate phosphoribosyltransferase low > 74
Escherichia coli ECOR38 0.37 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR 0.71 HEPCGN_14420 pyrE Orotate phosphoribosyltransferase low > 85
Escherichia coli ECRC102 0.37 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR 0.71 NIAGMN_13360 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli ECRC101 0.37 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR 0.71 MCAODC_06110 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR 0.71 ECOLIN_RS20750 orotate phosphoribosyltransferase 0.85 13
Escherichia coli ECOR27 0.37 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR 0.71 NOLOHH_07480 pyrE Orotate phosphoribosyltransferase low > 57
Escherichia coli ECRC101 0.37 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR 0.71 OKFHMN_15600 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli BW25113 0.37 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.71 b3642 pyrE orotate phosphoribosyltransferase (NCBI) low > 76
Escherichia coli ECRC99 0.37 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR 0.71 KEDOAH_12550 pyrE Orotate phosphoribosyltransferase — —
Escherichia coli BL21 0.37 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.71 ECD_03499 orotate phosphoribosyltransferase low > 60
Escherichia fergusonii Becca 0.37 EFB2_04651 Hydrogen peroxide-inducible genes activator 0.71 EFB2_00171 Orotate phosphoribosyltransferase low > 86
Pectobacterium carotovorum WPP14 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR 0.72 HER17_RS20850 orotate phosphoribosyltransferase low > 75
Enterobacter asburiae PDN3 0.36 EX28DRAFT_4424 Transcriptional regulator 0.71 EX28DRAFT_3892 orotate phosphoribosyltransferase (EC 2.4.2.10) — —
Enterobacter sp. TBS_079 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator 0.70 MPMX20_00093 Orotate phosphoribosyltransferase low > 85
Klebsiella michiganensis M5al 0.36 BWI76_RS00865 DNA-binding transcriptional regulator OxyR 0.72 BWI76_RS27385 orotate phosphoribosyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2347 Hydrogen peroxide-inducible genes activator 0.71 GFF367 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 78
Rahnella sp. WP5 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR 0.72 EX31_RS14500 orotate phosphoribosyltransferase low > 89
Pantoea sp. MT58 0.35 IAI47_00930 DNA-binding transcriptional regulator OxyR 0.68 IAI47_00600 orotate phosphoribosyltransferase low > 76
Serratia liquefaciens MT49 0.35 IAI46_24475 DNA-binding transcriptional regulator OxyR 0.73 IAI46_24845 orotate phosphoribosyltransferase 0.60 18
Erwinia tracheiphila SCR3 0.35 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR 0.69 LU632_RS22015 pyrE orotate phosphoribosyltransferase low > 74
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR 0.61 OKGIIK_15685 pyrE orotate phosphoribosyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_13340 DNA-binding transcriptional regulator OxyR 0.72 CSW01_01120 orotate phosphoribosyltransferase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator 0.49 Xcc-8004.4884.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) low > 74
Rhodanobacter denitrificans MT42 0.31 LRK55_RS04545 LysR substrate-binding domain-containing protein 0.59 LRK55_RS08720 orotate phosphoribosyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS04765 LysR substrate-binding domain-containing protein 0.59 LRK54_RS09190 orotate phosphoribosyltransferase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS05475 LysR substrate-binding domain-containing protein 0.47 ABIE51_RS00065 orotate phosphoribosyltransferase low > 62
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR 0.61 ABZR86_RS15640 orotate phosphoribosyltransferase low > 74
Acinetobacter radioresistens SK82 0.26 MPMX26_02334 Hydrogen peroxide-inducible genes activator 0.55 MPMX26_02937 Orotate phosphoribosyltransferase low > 36
Shewanella oneidensis MR-1 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) 0.72 SO4255 pyrE orotate phosphoribosyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) 0.71 Shewana3_3776 pyrE orotate phosphoribosyltransferase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.24 MIT1002_01120 Morphology and auto-aggregation control protein 0.71 MIT1002_04070 Orotate phosphoribosyltransferase — —
Shewanella amazonensis SB2B 0.24 Sama_0860 LysR family transcriptional regulator (RefSeq) 0.72 Sama_0321 pyrE orotate phosphoribosyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.23 Shew_1035 LysR family transcriptional regulator (RefSeq) 0.73 Shew_3487 pyrE orotate phosphoribosyltransferase (RefSeq) low > 60

Not shown: 28 genomes with orthologs for Psest_4191 only; 3 genomes with orthologs for Psest_3810 only