| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Variovorax sp. SCN45 | 1.0 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 1.0 | GFF2870 | | Nicotinate phosphoribosyltransferase (EC 6.3.4.21) | 0.92 | 6 |
| Variovorax sp. OAS795 | 0.95 | ABID97_RS06335 | | metalloprotease TldD | 0.94 | ABID97_RS10590 | | nicotinate phosphoribosyltransferase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.86 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | 0.81 | Ac3H11_2601 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.85 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.48 | GFF1573 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 90 |
| Cupriavidus basilensis FW507-4G11 | 0.73 | RR42_RS05875 | | protease TldD | 0.70 | RR42_RS14205 | | nicotinate phosphoribosyltransferase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.73 | HSERO_RS07155 | | peptidase C69 | 0.68 | HSERO_RS08100 | | nicotinate phosphoribosyltransferase | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.72 | ABZR87_RS01105 | | metalloprotease TldD | 0.69 | ABZR87_RS10040 | | nicotinate phosphoribosyltransferase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.72 | RS_RS13315 | | metalloprotease TldD | 0.69 | RS_RS05105 | | nicotinate phosphoribosyltransferase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.72 | BPHYT_RS03540 | | peptidase C69 | 0.73 | BPHYT_RS14535 | | nicotinate phosphoribosyltransferase | low | > 109 |
| Ralstonia solanacearum UW163 | 0.72 | UW163_RS08170 | | metalloprotease TldD | 0.69 | UW163_RS11790 | | nicotinate phosphoribosyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.72 | RALBFv3_RS05455 | | metalloprotease TldD | 0.69 | RALBFv3_RS14325 | | nicotinate phosphoribosyltransferase | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.71 | QEN71_RS26555 | | metalloprotease TldD | 0.72 | QEN71_RS04445 | | nicotinate phosphoribosyltransferase | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.71 | RPSI07_RS11850 | | metalloprotease TldD | 0.70 | RPSI07_RS19135 | | nicotinate phosphoribosyltransferase | low | > 81 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.71 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.73 | H281DRAFT_04330 | | nicotinate phosphoribosyltransferase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.71 | ABIE53_000851 | | TldD protein | 0.72 | ABIE53_003069 | | nicotinate phosphoribosyltransferase | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.70 | ABCV34_RS02590 | | metalloprotease TldD | 0.50 | ABCV34_RS02595 | | nicotinate phosphoribosyltransferase | low | > 48 |
| Dyella japonica UNC79MFTsu3.2 | 0.62 | ABZR86_RS21715 | | metalloprotease TldD | 0.69 | ABZR86_RS00460 | | nicotinate phosphoribosyltransferase | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.61 | OKGIIK_10280 | tldD | metalloprotease TldD | 0.68 | OKGIIK_03545 | pncB | nicotinate phosphoribosyltransferase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.59 | LRK55_RS03145 | | metalloprotease TldD | 0.67 | LRK55_RS14435 | | nicotinate phosphoribosyltransferase | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.59 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | 0.62 | Xcc-8004.4407.1 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.59 | LRK54_RS03395 | | metalloprotease TldD | 0.67 | LRK54_RS14720 | | nicotinate phosphoribosyltransferase | low | > 59 |
| Pseudomonas putida KT2440 | 0.58 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | 0.45 | PP_4868 | | Nicotinate phosphoribosyltransferase | low | > 96 |
| Pantoea sp. MT58 | 0.58 | IAI47_02465 | | metalloprotease TldD | 0.37 | IAI47_12750 | | nicotinate phosphoribosyltransferase | low | > 76 |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.46 | Psyr_0595 | | Nicotinate phosphoribosyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.46 | Psyr_0595 | | Nicotinate phosphoribosyltransferase | low | > 86 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_22685 | | metalloprotease TldD | 0.38 | IAI46_08765 | | nicotinate phosphoribosyltransferase | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS04340 | | metalloprotease TldD | 0.45 | PFLU_RS02705 | | nicotinate phosphoribosyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS04340 | | metalloprotease TldD | 0.45 | PFLU_RS02705 | | nicotinate phosphoribosyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.56 | AO353_05215 | | protease TldD | 0.45 | AO353_13320 | | nicotinate phosphoribosyltransferase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.56 | PS417_04285 | | protease TldD | 0.45 | PS417_02635 | | nicotinate phosphoribosyltransferase | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.46 | Psest_1171 | | nicotinate phosphoribosyltransferase | low | > 67 |
| Dickeya dadantii 3937 | 0.56 | DDA3937_RS01460 | | metalloprotease TldD | 0.39 | DDA3937_RS12890 | | nicotinate phosphoribosyltransferase | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.56 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.46 | Pf1N1B4_1386 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 87 |
| Pseudomonas sp. RS175 | 0.56 | PFR28_00161 | | Metalloprotease TldD | 0.46 | PFR28_05149 | | Nicotinate phosphoribosyltransferase 2 | low | > 88 |
| Dickeya dianthicola 67-19 | 0.56 | HGI48_RS01380 | | metalloprotease TldD | 0.39 | HGI48_RS12960 | | nicotinate phosphoribosyltransferase | low | > 71 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_07095 | | protease TldD | 0.46 | AO356_08520 | | nicotinate phosphoribosyltransferase | low | > 104 |
| Pseudomonas sp. S08-1 | 0.55 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.45 | OH686_03820 | | nicotinate phosphoribosyltransferase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | 0.46 | Pf6N2E2_3585 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 103 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS01440 | | metalloprotease TldD | 0.40 | DZA65_RS13425 | | nicotinate phosphoribosyltransferase | low | > 75 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_04151 | | Metalloprotease TldD | 0.37 | MPMX20_01589 | | Nicotinate phosphoribosyltransferase | low | > 85 |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | 0.45 | PfGW456L13_129 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 87 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS25470 | | metalloprotease TldD | 0.36 | BWI76_RS09885 | | nicotinate phosphoribosyltransferase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | 0.37 | GFF3695 | | Nicotinate phosphoribosyltransferase (EC 2.4.2.11) | low | > 78 |
| Escherichia fergusonii Becca | 0.55 | EFB2_00586 | | Metalloprotease TldD | 0.38 | EFB2_03133 | | Nicotinate phosphoribosyltransferase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS18595 | | metalloprotease TldD | 0.38 | ECOLIN_RS04930 | | nicotinate phosphoribosyltransferase | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_00460 | | Metalloprotease TldD | 0.38 | OHPLBJKB_02735 | | Nicotinate phosphoribosyltransferase | low | > 73 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_09555 | tldD | metalloprotease TldD | 0.38 | NOLOHH_21925 | pncB | nicotinate phosphoribosyltransferase | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS20140 | | metalloprotease TldD | 0.39 | HER17_RS12015 | | nicotinate phosphoribosyltransferase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.55 | CSW01_02220 | | metalloprotease TldD | 0.32 | CSW01_14505 | | nicotinate phosphoribosyltransferase | low | > 62 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_08275 | tldD | metalloprotease TldD | 0.38 | MCAODC_24760 | pncB | nicotinate phosphoribosyltransferase | low | > 87 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_17755 | tldD | metalloprotease TldD | 0.38 | OKFHMN_05370 | pncB | nicotinate phosphoribosyltransferase | low | > 80 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_01980 | tldD | metalloprotease TldD | 0.38 | BNILDI_20180 | pncB | nicotinate phosphoribosyltransferase | 0.73 | 59 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_15515 | tldD | metalloprotease TldD | 0.38 | NIAGMN_03090 | pncB | nicotinate phosphoribosyltransferase | — | — |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_10395 | tldD | metalloprotease TldD | 0.38 | KEDOAH_22365 | pncB | nicotinate phosphoribosyltransferase | — | — |
| Escherichia coli BW25113 | 0.55 | b3244 | tldD | predicted peptidase (NCBI) | 0.38 | b0931 | pncB | nicotinate phosphoribosyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_21380 | tldD | metalloprotease TldD | 0.38 | JDDGAC_08980 | pncB | nicotinate phosphoribosyltransferase | low | > 86 |
| Escherichia coli BL21 | 0.55 | ECD_03104 | | putative peptidase | 0.38 | ECD_00935 | | nicotinate phosphoribosyltransferase | low | > 61 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_16620 | tldD | metalloprotease TldD | 0.37 | HEPCGN_23155 | pncB | nicotinate phosphoribosyltransferase | low | > 87 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.37 | EX28DRAFT_2005 | | nicotinate phosphoribosyltransferase | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS21420 | tldD | metalloprotease TldD | 0.36 | LU632_RS09925 | pncB | nicotinate phosphoribosyltransferase | — | — |
| Rahnella sp. WP5 | 0.54 | EX31_RS12265 | | metalloprotease TldD | 0.38 | EX31_RS18130 | | nicotinate phosphoribosyltransferase | low | > 89 |
| Azospirillum sp. SherDot2 | 0.52 | MPMX19_00882 | | Metalloprotease TldD | 0.19 | MPMX19_03477 | | Nicotinate phosphoribosyltransferase | low | > 112 |
| Rhizobium sp. OAE497 | 0.51 | ABIE40_RS04050 | | metalloprotease TldD | 0.24 | ABIE40_RS00645 | | nicotinate phosphoribosyltransferase | low | > 107 |
| Agrobacterium fabrum C58 | 0.50 | Atu0765 | | TldD | 0.23 | Atu0213 | | nicotinate phosphoribosyltransferase | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.50 | SMc00960 | | hypothetical protein | 0.24 | SMc02276 | | nicotinate phosphoribosyltransferase | low | > 103 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.49 | A4249_RS10860 | | metalloprotease TldD | 0.21 | A4249_RS08365 | | nicotinate phosphoribosyltransferase | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.49 | PGA1_c06240 | | protein TldD | 0.19 | PGA1_c32130 | | nicotinate phosphoribosyltransferase PncB | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.24 | Dshi_3345 | | nicotinate phosphoribosyltransferase (RefSeq) | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.35 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.25 | BT1913 | | nicotinate phosphoribosyltransferase (NCBI ptt file) | low | > 81 |
Not shown: 21 genomes with orthologs for GFF4449 only; 3 genomes with orthologs for GFF2870 only