| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sphingobium sp. HT1-2 | 1.0 | GFF3399 | | Lactate-responsive regulator LldR in Enterobacteria, GntR family | 1.0 | GFF2397 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) | 0.69 | 15 |
| Xanthobacter sp. DMC5 | 0.49 | GFF680 | | Putative L-lactate dehydrogenase operon regulatory protein | 0.58 | GFF566 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | — | — |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS10290 | | transcriptional regulator LldR | 0.39 | ABCV34_RS15370 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 48 |
| Enterobacter sp. TBS_079 | 0.36 | MPMX20_00130 | | Putative L-lactate dehydrogenase operon regulatory protein | 0.37 | MPMX20_00996 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF410 | | Lactate-responsive regulator LldR in Enterobacteria, GntR family | 0.38 | GFF4304 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_3854 | | Transcriptional regulators | 0.38 | EX28DRAFT_2566 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 76 |
| Escherichia coli ECRC62 | 0.36 | BNILDI_03860 | lldR | transcriptional regulator LldR | 0.38 | BNILDI_22860 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 75 |
| Klebsiella pneumoniae MKP103 | 0.36 | KDGMDA_07875 | | transcriptional regulator LldR | 0.38 | KDGMDA_14390 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 95 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_07655 | lldR | transcriptional regulator LldR | 0.38 | NOLOHH_01445 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_00095 | | Putative L-lactate dehydrogenase operon regulatory protein | 0.38 | OHPLBJKB_03271 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 74 |
| Escherichia coli BL21 | 0.35 | ECD_03462 | | dual role activator/repressor for lldPRD operon | 0.38 | ECD_00353 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 61 |
| Escherichia coli BW25113 | 0.35 | b3604 | lldR | DNA-binding transcriptional repressor (NCBI) | 0.38 | b0405 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | 0.13 | 49 |
| Pantoea sp. MT58 | 0.35 | IAI47_15025 | | transcriptional regulator LldR | 0.38 | IAI47_14810 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 76 |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS27190 | | transcriptional regulator LldR | 0.38 | BWI76_RS06295 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 92 |
| Escherichia coli ECRC101 | 0.35 | MCAODC_06285 | lldR | transcriptional regulator LldR | 0.38 | MCAODC_27735 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 87 |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_12375 | lldR | transcriptional regulator LldR | 0.38 | KEDOAH_19455 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | — | — |
| Escherichia coli ECRC100 | 0.35 | OKFHMN_15775 | lldR | transcriptional regulator LldR | 0.38 | OKFHMN_08510 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 79 |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_14615 | lldR | transcriptional regulator LldR | 0.38 | HEPCGN_07150 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 88 |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_19400 | lldR | transcriptional regulator LldR | 0.38 | JDDGAC_12165 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 87 |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_13535 | lldR | transcriptional regulator LldR | 0.38 | NIAGMN_06565 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 80 |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS20575 | | transcriptional regulator LldR | 0.37 | ECOLIN_RS02440 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | — | — |
| Escherichia fergusonii Becca | 0.35 | EFB2_00206 | | Putative L-lactate dehydrogenase operon regulatory protein | 0.38 | EFB2_03652 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 86 |
| Pantoea agglomerans CFBP13505 P0401 | 0.34 | PagCFBP13505_RS10135 | | transcriptional regulator LldR | 0.38 | PagCFBP13505_RS10385 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 74 |
| Acinetobacter baumannii LAC-4 | 0.32 | RR41_RS18510 | | transcriptional regulator LldR | 0.37 | RR41_RS02945 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.30 | MPMX26_02258 | | Putative L-lactate dehydrogenase operon regulatory protein | 0.36 | MPMX26_00441 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 36 |
| Pseudomonas sp. S08-1 | 0.28 | OH686_17020 | | Lactate-responsive regulator LldR in Enterobacteria, GntR family | 0.39 | OH686_17425 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 80 |
| Pseudomonas aeruginosa MRSN321 | 0.28 | DY961_RS09605 | | FCD domain-containing protein | 0.38 | DY961_RS13800 | queA;go_function=transferase | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.28 | IKLFDK_29745 | | transcriptional regulator PdhR | 0.38 | IKLFDK_19690 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.28 | DQ20_RS52435 | | FCD domain-containing protein | 0.38 | DQ20_RS43300 | queA;go_function=transferase | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 101 |
| Pseudomonas segetis P6 | 0.28 | MPMX49_01174 | | Pyruvate dehydrogenase complex repressor | 0.39 | MPMX49_01497 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 75 |
| Magnetospirillum magneticum AMB-1 | 0.27 | AMB_RS01210 | | FCD domain-containing protein | 0.58 | AMB_RS03085 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_3379 | | Lactate-responsive regulator LldR in Enterobacteria, GntR family | 0.39 | Pf6N2E2_3199 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | low | > 103 |
| Pseudomonas sp. SVBP6 | 0.27 | COO64_RS15305 | | GntR family transcriptional regulator | 0.39 | COO64_RS03845 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS25940 | | FCD domain-containing protein | 0.39 | PFLU_RS24905 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.20 | 41 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS25940 | | FCD domain-containing protein | 0.39 | PFLU_RS24905 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.27 | GEMAOFIL_04970 | | Pyruvate dehydrogenase complex repressor | 0.39 | GEMAOFIL_04802 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.26 | QF045_RS26355 | | FCD domain-containing protein | 0.39 | QF045_RS25470 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_05695 | | transcriptional regulator PdhR | 0.39 | AO353_15785 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_5113 | | Lactate-responsive regulator LldR in Enterobacteria, GntR family | 0.39 | PfGW456L13_4883 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_07545 | | transcriptional regulator PdhR | 0.39 | AO356_06695 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.26 | Pf1N1B4_1185 | | Lactate-responsive regulator LldR in Enterobacteria, GntR family | 0.39 | Pf1N1B4_3005 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | low | > 87 |
| Pseudomonas sp. BP01 | 0.26 | JOY50_RS26710 | | FCD domain-containing protein | 0.39 | JOY50_RS22870 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 84 |
| Pseudomonas sp. DMC3 | 0.26 | GFF4964 | | Pyruvate dehydrogenase complex repressor | 0.40 | GFF4360 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 89 |
| Pseudomonas putida KT2440 | 0.25 | PP_4734 | | DNA-binding transcriptional dual regulator, LldR-L-lactate | 0.39 | PP_0832 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 96 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_00064 | | Pyruvate dehydrogenase complex repressor | 0.39 | PFR28_00276 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 88 |
| Pseudomonas simiae WCS417 | 0.25 | PS417_24100 | | transcriptional regulator PdhR | 0.39 | PS417_23250 | | S-adenosylmethionine tRNA ribosyltransferase | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.25 | Psest_0956 | | Transcriptional regulators | 0.39 | Psest_1241 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 67 |
| Burkholderia phytofirmans PsJN | 0.23 | BPHYT_RS26990 | | GntR family transcriptional regulator | 0.37 | BPHYT_RS03405 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.23 | H281DRAFT_02906 | | transcriptional regulator, GntR family | 0.38 | H281DRAFT_04671 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.23 | ABIE53_005884 | | GntR family transcriptional repressor for pyruvate dehydrogenase complex | 0.36 | ABIE53_000832 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 113 |
| Alteromonas macleodii MIT1002 | 0.23 | MIT1002_03004 | | Pyruvate dehydrogenase complex repressor | 0.39 | MIT1002_02814 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 70 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_06090 | | Pyruvate dehydrogenase complex repressor | 0.53 | MPMX19_01696 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | low | > 112 |
| Pectobacterium carotovorum WPP14 | 0.22 | HER17_RS03285 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.37 | HER17_RS15995 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.22 | LU632_RS03075 | pdhR | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | LU632_RS18485 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 73 |
| Dickeya dianthicola 67-19 | 0.22 | HGI48_RS17855 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | HGI48_RS05525 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 71 |
| Dickeya dianthicola ME23 | 0.22 | DZA65_RS19005 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | DZA65_RS05850 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 75 |
| Serratia liquefaciens MT49 | 0.22 | IAI46_21330 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | IAI46_04835 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 87 |
| Dickeya dadantii 3937 | 0.22 | DDA3937_RS17930 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | DDA3937_RS05465 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 74 |
| Erwinia tracheiphila HP pepo 2.2 | 0.21 | IJEDHG_05795 | | Pyruvate dehydrogenase complex repressor | 0.38 | IJEDHG_16300 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 61 |
| Paraburkholderia sabiae LMG 24235 | 0.21 | QEN71_RS10135 | | FadR/GntR family transcriptional regulator | 0.36 | QEN71_RS26635 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 153 |
| Shewanella sp. ANA-3 | 0.21 | Shewana3_0425 | pdhR | transcriptional regulator PdhR (RefSeq) | 0.39 | Shewana3_1434 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.21 | SO0423 | pdhR | pyruvate dehydrogenase complex repressor (NCBI ptt file) | 0.39 | SO3114 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) | low | > 76 |
| Rahnella sp. WP5 | 0.21 | EX31_RS03485 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | EX31_RS22090 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.21 | CSW01_12225 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.38 | CSW01_03840 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 62 |
| Erwinia amylovora T8 | 0.20 | OLJFJH_01000 | | pyruvate dehydrogenase complex transcriptional repressor PdhR | 0.40 | OLJFJH_18145 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 58 |
| Sinorhizobium meliloti 1021 | 0.20 | SMc00829 | | transcriptional regulator | 0.61 | SMc01207 | | S-adenosylmethionine--tRNA ribosyltransferase-isomerase | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.20 | Dshi_3026 | | GntR domain protein (RefSeq) | 0.47 | Dshi_1180 | | Queuosine biosynthesis protein (RefSeq) | low | > 64 |
| Shewanella loihica PV-4 | 0.19 | Shew_3432 | pdhR | transcriptional regulator PdhR (RefSeq) | 0.41 | Shew_2338 | | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.19 | Sama_0374 | pdhR | transcriptional regulator PdhR (RefSeq) | 0.40 | Sama_2194 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) | low | > 62 |
| Azospirillum brasilense Sp245 | 0.19 | AZOBR_RS25130 | | GntR family transcriptional regulator | 0.54 | AZOBR_RS06300 | | S-adenosylmethionine tRNA ribosyltransferase | low | > 97 |
| Agrobacterium fabrum C58 | 0.17 | Atu0662 | | transcriptional regulator, GntR family | 0.63 | Atu1678 | | S-adenosylmethionine tRNA ribosyltransferase-isomerase | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.17 | PGA1_c00760 | | putative pyruvate dehydrogenase complex repressor | 0.47 | PGA1_c17420 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA | 0.22 | 8 |
| Rhodospirillum rubrum S1H | 0.15 | Rru_A1414 | | regulatory protein GntR (NCBI) | 0.58 | Rru_A0281 | | Queuosine biosynthesis protein (NCBI) | low | > 58 |
| Cupriavidus basilensis FW507-4G11 | 0.15 | RR42_RS21300 | | GntR family transcriptional regulator | 0.39 | RR42_RS17395 | | S-adenosylmethionine tRNA ribosyltransferase | low | > 128 |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS24530 | | FadR/GntR family transcriptional regulator | 0.61 | ABIE40_RS09430 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | low | > 107 |
| Desulfovibrio vulgaris Miyazaki F | 0.15 | DvMF_1205 | | GntR domain protein (RefSeq) | 0.30 | DvMF_2053 | | S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) | low | > 51 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.14 | Psyr_0299 | | transcriptional regulator, GntR family | 0.39 | Psyr_1227 | | Queuosine biosynthesis protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.14 | Psyr_0299 | | transcriptional regulator, GntR family | 0.39 | Psyr_1227 | | Queuosine biosynthesis protein | low | > 86 |
Not shown: 1 genomes with orthologs for GFF3399 only; 42 genomes with orthologs for GFF2397 only