Conservation of cofitness between Psest_2585 and Psest_2095 in Pseudomonas stutzeri RCH2

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2585 pseudouridylate synthase I 1.0 Psest_2095 Arabinose efflux permease 0.19 14
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.37 Pf1N1B4_115 Membrane protein mosC low > 87
Pseudomonas sp. RS175 0.73 PFR28_02817 tRNA pseudouridine synthase A 0.39 PFR28_02856 Inner membrane protein YbjJ low > 88
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.37 Pf6N2E2_32 Membrane protein mosC low > 103
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.39 PfGW456L13_2443 Membrane protein mosC low > 87
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_1662 tRNA pseudouridine synthase 0.38 Psyr_3360 Major facilitator superfamily low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_1662 tRNA pseudouridine synthase 0.38 Psyr_3360 Major facilitator superfamily low > 86
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_20660 pseudouridine synthase 0.37 AO353_19740 MFS transporter low > 101
Pseudomonas simiae WCS417 0.72 PS417_18565 pseudouridine synthase 0.36 PS417_09770 MFS transporter — —
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_21435 pseudouridine synthase 0.36 AO356_21230 MFS transporter low > 104
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.38 PFLU_RS10350 MFS transporter low > 109
Pseudomonas fluorescens SBW25 0.71 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.38 PFLU_RS10350 MFS transporter low > 109
Enterobacter sp. TBS_079 0.50 MPMX20_03253 tRNA pseudouridine synthase A 0.15 MPMX20_01483 Inner membrane protein YbjJ low > 85
Enterobacter asburiae PDN3 0.49 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.15 EX28DRAFT_2121 Fucose permease low > 76
Escherichia fergusonii Becca 0.49 EFB2_01540 tRNA pseudouridine synthase A 0.15 EFB2_03261 Inner membrane protein YbjJ low > 86
Rahnella sp. WP5 0.49 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.27 EX31_RS01055 MFS transporter low > 89
Escherichia coli ECRC62 0.49 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.15 BNILDI_20640 ybjJ Inner membrane protein YbjJ — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.14 GFF749 Putative transport protein/putative regulator low > 78
Escherichia coli BW25113 0.49 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.16 b0845 ybjJ predicted transporter (NCBI) low > 76
Escherichia coli ECRC99 0.49 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.16 KEDOAH_21900 ybjJ Inner membrane protein YbjJ — —
Escherichia coli ECOR38 0.49 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.16 HEPCGN_02020 ybjJ Inner membrane protein YbjJ low > 85
Escherichia coli ECRC98 0.49 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.16 JDDGAC_09645 ybjJ Inner membrane protein YbjJ — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.16 ECOLIN_RS04490 MFS transporter low > 52
Escherichia coli BL21 0.49 ECD_02243 tRNA pseudouridine(38-40) synthase 0.16 ECD_00812 putative drug efflux MFS transporter, inner membrane protein — —
Escherichia coli ECRC101 0.49 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.16 MCAODC_25225 ybjJ Inner membrane protein YbjJ — —
Escherichia coli ECRC102 0.49 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.16 NIAGMN_04055 ybjJ Inner membrane protein YbjJ — —
Escherichia coli ECOR27 0.49 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.15 NOLOHH_22380 ybjJ Inner membrane protein YbjJ low > 57
Escherichia coli ECRC101 0.49 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.16 OKFHMN_06010 ybjJ Inner membrane protein YbjJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.15 OHPLBJKB_02865 Inner membrane protein YbjJ low > 73
Klebsiella michiganensis M5al 0.49 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.15 BWI76_RS09170 MFS transporter low > 92
Serratia liquefaciens MT49 0.49 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.34 IAI46_17440 MFS transporter low > 86
Pectobacterium carotovorum WPP14 0.48 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.34 HER17_RS15565 MFS transporter low > 75
Erwinia tracheiphila SCR3 0.48 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.32 LU632_RS25535 MFS transporter — —
Shewanella amazonensis SB2B 0.47 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.29 Sama_2920 major facilitator transporter (RefSeq) low > 62
Dickeya dianthicola ME23 0.47 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.35 DZA65_RS12370 MFS transporter low > 75
Pantoea sp. MT58 0.47 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.31 IAI47_06485 MFS transporter low > 76
Dickeya dadantii 3937 0.47 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.33 DDA3937_RS11785 MFS transporter low > 74
Dickeya dianthicola 67-19 0.47 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.34 HGI48_RS11835 MFS transporter low > 71
Acinetobacter radioresistens SK82 0.46 MPMX26_00352 tRNA pseudouridine synthase A 0.35 MPMX26_02459 Inner membrane protein YbjJ low > 36
Paraburkholderia graminis OAS925 0.43 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.16 ABIE53_000462 fucose permease low > 113
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.14 H281DRAFT_02160 Fucose permease low > 103
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS33885 tRNA pseudouridine synthase A 0.15 BPHYT_RS01900 amino acid ABC transporter permease low > 109
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.31 QEN71_RS39115 MFS transporter low > 153
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS16485 tRNA pseudouridine synthase A 0.17 HSERO_RS23500 MFS transporter permease low > 78
Ralstonia solanacearum PSI07 0.39 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.17 RPSI07_RS21095 MFS transporter low > 81
Variovorax sp. SCN45 0.38 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.13 GFF3851 Uncharacterized MFS-type transporter low > 127
Ralstonia solanacearum GMI1000 0.38 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.16 RS_RS02930 MFS transporter low > 80
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.17 ABZR87_RS08125 MFS transporter low > 80
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.17 RALBFv3_RS12225 MFS transporter — —
Ralstonia solanacearum UW163 0.37 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.17 UW163_RS01380 MFS transporter — —
Variovorax sp. OAS795 0.36 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.12 ABID97_RS08270 MFS transporter low > 91
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.27 LRK54_RS01830 MFS transporter low > 59
Rhodanobacter denitrificans MT42 0.36 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.27 LRK55_RS01620 MFS transporter low > 63
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS14370 tRNA pseudouridine synthase A 0.17 RR42_RS19595 amino acid ABC transporter permease — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.24 ABZR86_RS08160 MFS transporter low > 74
Rhodospirillum rubrum S1H 0.28 Rru_A3352 Pseudouridylate synthase (NCBI) 0.21 Rru_A1180 Major facilitator superfamily MFS_1 (NCBI) — —
Rhizobium sp. OAE497 0.27 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.21 ABIE40_RS18750 MFS transporter low > 107
Agrobacterium fabrum C58 0.27 Atu0368 tRNA pseudouridine synthase I 0.22 Atu2724 MFS permease low > 89
Sinorhizobium meliloti 1021 0.27 SMc01099 tRNA pseudouridine synthase A 0.22 SMc03889 transporter low > 103
Azospirillum brasilense Sp245 0.27 AZOBR_RS03570 tRNA pseudouridine synthase A 0.21 AZOBR_RS18830 MFS transporter — —
Azospirillum sp. SherDot2 0.26 MPMX19_02005 tRNA pseudouridine synthase A 0.24 MPMX19_02660 Inner membrane protein YbjJ — —
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05650 tRNA pseudouridine synthase A 0.17 PGA1_c16750 putative MFS-type transporter low > 62
Dinoroseobacter shibae DFL-12 0.23 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 0.15 Dshi_2626 major facilitator superfamily MFS_1 (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_1728 pseudouridylate synthase I 0.19 Echvi_2296 Arabinose efflux permease low > 79
Bacteroides ovatus ATCC 8483 0.20 BACOVA_05075 tRNA pseudouridine synthase A 0.17 BACOVA_00782 transporter, major facilitator family protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.19 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.18 BT0976 putative transport protein (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.23 CA265_RS24170 MFS transporter low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.23 ABZR88_RS04970 MFS transporter low > 71

Not shown: 33 genomes with orthologs for Psest_2585 only; 0 genomes with orthologs for Psest_2095 only