Conservation of cofitness between GFF829 and GFF1973 in Hydrogenophaga sp. GW460-11-11-14-LB1

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF829 DNA repair protein RecN 1.0 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.74 14
Acidovorax sp. GW101-3H11 0.59 Ac3H11_3460 DNA repair protein RecN 0.72 Ac3H11_4848 D-alanine dehydrogenase (EC 1.4.99.-) (from data) low > 79
Variovorax sp. SCN45 0.59 GFF2357 DNA repair protein RecN 0.45 GFF6883 D-amino acid dehydrogenase (EC 1.4.99.6) low > 127
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26535 DNA repair protein RecN 0.33 QEN71_RS04190 D-amino acid dehydrogenase low > 153
Ralstonia solanacearum UW163 0.45 UW163_RS08210 DNA repair protein RecN 0.36 UW163_RS15940 D-amino acid dehydrogenase small subunit — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS05415 DNA repair protein RecN 0.36 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit low > 76
Ralstonia solanacearum PSI07 0.45 RPSI07_RS11890 DNA repair protein RecN 0.36 RPSI07_RS19600 D-amino acid dehydrogenase small subunit low > 81
Ralstonia solanacearum GMI1000 0.44 RS_RS13275 DNA repair protein RecN 0.36 RS_RS04605 D-amino acid dehydrogenase small subunit low > 80
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01065 DNA repair protein RecN 0.36 ABZR87_RS09560 D-amino acid dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS05910 DNA repair protein 0.34 RR42_RS04585 amino acid dehydrogenase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_04692 DNA replication and repair protein RecN 0.33 H281DRAFT_04287 D-amino-acid dehydrogenase 0.38 22
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS03060 DNA repair protein 0.43 HSERO_RS07275 D-amino acid dehydrogenase low > 78
Castellaniella sp019104865 MT123 0.43 ABCV34_RS07470 DNA repair protein RecN 0.41 ABCV34_RS06160 D-amino acid dehydrogenase low > 48
Paraburkholderia graminis OAS925 0.43 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.33 ABIE53_003133 D-amino-acid dehydrogenase low > 113
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03560 DNA repair protein 0.33 BPHYT_RS17845 amino acid dehydrogenase low > 109
Dechlorosoma suillum PS 0.42 Dsui_3072 DNA repair protein RecN 0.43 Dsui_0501 glycine/D-amino acid oxidase, deaminating — —
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.35 MPMX20_02699 D-amino acid dehydrogenase low > 85
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2719 DNA repair protein RecN 0.35 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.34 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 78
Pseudomonas sp. S08-1 0.36 OH686_17050 DNA repair protein RecN 0.34 OH686_13685 D-amino acid dehydrogenase low > 80
Dickeya dadantii 3937 0.35 DDA3937_RS04325 DNA repair protein RecN 0.36 DDA3937_RS11170 D-amino acid dehydrogenase low > 74
Pantoea sp. MT58 0.35 IAI47_04810 DNA repair protein RecN 0.35 IAI47_08890 D-amino acid dehydrogenase low > 76
Klebsiella michiganensis M5al 0.35 BWI76_RS21560 DNA repair protein RecN 0.34 BWI76_RS17735 D-amino acid dehydrogenase small subunit low > 92
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.36 DZA65_RS11540 D-amino acid dehydrogenase low > 75
Dickeya dianthicola 67-19 0.35 HGI48_RS04320 DNA repair protein RecN 0.36 HGI48_RS11195 D-amino acid dehydrogenase low > 71
Serratia liquefaciens MT49 0.35 IAI46_19635 DNA repair protein RecN 0.34 IAI46_14460 D-amino acid dehydrogenase low > 86
Escherichia coli BL21 0.35 ECD_02504 recombination and repair protein 0.35 ECD_01164 D-amino acid dehydrogenase low > 60
Escherichia coli BW25113 0.35 b2616 recN recombination and repair protein (NCBI) 0.35 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) low > 76
Escherichia coli ECOR27 0.35 NOLOHH_12815 recN DNA repair protein RecN 0.35 NOLOHH_20725 dadA D-amino acid dehydrogenase low > 57
Escherichia coli ECOR38 0.35 HEPCGN_20265 recN DNA repair protein RecN 0.35 HEPCGN_24750 dadA D-amino acid dehydrogenase low > 85
Escherichia coli ECRC62 0.35 BNILDI_11620 recN DNA repair protein RecN 0.35 BNILDI_18890 dadA D-amino acid dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_01091 DNA repair protein RecN 0.35 OHPLBJKB_02500 D-amino acid dehydrogenase low > 73
Escherichia fergusonii Becca 0.35 EFB2_01277 DNA repair protein RecN 0.35 EFB2_02743 D-amino acid dehydrogenase low > 86
Rahnella sp. WP5 0.35 EX31_RS21760 DNA repair protein RecN 0.33 EX31_RS10485 D-amino acid dehydrogenase low > 89
Escherichia coli Nissle 1917 0.35 ECOLIN_RS14775 DNA repair protein RecN 0.35 ECOLIN_RS07185 D-amino acid dehydrogenase — —
Escherichia coli ECRC99 0.35 KEDOAH_07075 recN DNA repair protein RecN 0.35 KEDOAH_25305 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC98 0.35 JDDGAC_24810 recN DNA repair protein RecN 0.35 JDDGAC_06220 dadA D-amino acid dehydrogenase — —
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.36 HER17_RS11170 D-amino acid dehydrogenase low > 75
Escherichia coli ECRC101 0.35 MCAODC_11670 recN DNA repair protein RecN 0.35 MCAODC_21880 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC101 0.35 OKFHMN_21145 recN DNA repair protein RecN 0.35 OKFHMN_28290 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC102 0.35 NIAGMN_18915 recN DNA repair protein RecN 0.35 NIAGMN_27930 dadA D-amino acid dehydrogenase — —
Marinobacter adhaerens HP15 0.34 HP15_3084 DNA repair protein RecN 0.46 HP15_2610 D-amino acid dehydrogenase small subunit low > 73
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3370 DNA repair protein RecN 0.34 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 103
Pseudomonas sp. RS175 0.33 PFR28_00071 DNA repair protein RecN 0.34 PFR28_04399 D-amino acid dehydrogenase 1 low > 88
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5106 DNA repair protein RecN 0.35 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 87
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4197 DNA replication and repair protein RecN 0.34 Psyr_0235 D-amino acid dehydrogenase small subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4197 DNA replication and repair protein RecN 0.34 Psyr_0235 D-amino acid dehydrogenase small subunit low > 86
Pseudomonas stutzeri RCH2 0.33 Psest_0962 DNA repair protein RecN 0.33 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) low > 67
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_07510 DNA repair protein RecN 0.34 AO356_12620 amino acid dehydrogenase low > 104
Pseudomonas simiae WCS417 0.33 PS417_24070 recombination and repair protein 0.35 PS417_27705 amino acid dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05660 DNA repair protein RecN 0.34 AO353_09155 amino acid dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1178 DNA repair protein RecN 0.35 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 87
Erwinia tracheiphila SCR3 0.33 LU632_RS16985 recN DNA repair protein RecN 0.32 LU632_RS13070 D-amino acid dehydrogenase low > 74
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.35 CSW01_04065 D-amino acid dehydrogenase small subunit low > 62
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS25910 DNA repair protein RecN 0.34 PFLU_RS29380 D-amino acid dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS25910 DNA repair protein RecN 0.34 PFLU_RS29380 D-amino acid dehydrogenase low > 109
Pseudomonas putida KT2440 0.32 PP_4729 factor used in recombination and DNA repair 0.35 PP_4434 D-amino acid dehydrogenase 1 small subunit low > 96
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.34 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 74
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS17960 DNA repair protein RecN 0.36 LRK54_RS00590 D-amino acid dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS17815 DNA repair protein RecN 0.36 LRK55_RS00360 D-amino acid dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_07340 recN DNA repair protein RecN 0.36 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit low > 52
Agrobacterium fabrum C58 0.28 Atu2083 DNA repair protein RecN 0.36 Atu3293 D-amino acid dehydrogenase small subunit low > 89
Acinetobacter radioresistens SK82 0.27 MPMX26_00239 DNA repair protein RecN 0.35 MPMX26_01248 D-amino acid dehydrogenase low > 36
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.34 AMB_RS14080 D-amino-acid dehydrogenase — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS12395 DNA repair protein RecN 0.38 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) — —
Azospirillum sp. SherDot2 0.26 MPMX19_01601 DNA repair protein RecN 0.38 MPMX19_06097 D-amino acid dehydrogenase 1 low > 112
Rhodospirillum rubrum S1H 0.23 Rru_A0940 DNA repair protein RecN (NCBI) 0.35 Rru_A1546 FAD dependent oxidoreductase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_2413 DNA repair protein RecN (RefSeq) 0.33 Dshi_0558 D-amino-acid dehydrogenase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.20 A4249_RS02620 DNA repair protein RecN 0.32 A4249_RS08770 D-amino acid dehydrogenase low > 48

Not shown: 31 genomes with orthologs for GFF829 only; 1 genomes with orthologs for GFF1973 only