Conservation of cofitness between GFF2043 and GFF1895 in Hydrogenophaga sp. GW460-11-11-14-LB1

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF2043 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster 1.0 GFF1895 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) 0.67 17
Paraburkholderia graminis OAS925 0.50 ABIE53_001806 gamma-glutamylputrescine oxidase 0.70 ABIE53_005233 malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase low > 113
Variovorax sp. OAS795 0.49 ABID97_RS12365 FAD-binding oxidoreductase 0.82 ABID97_RS19485 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 91
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS23125 FAD-dependent oxidoreductase 0.69 BPHYT_RS28825 methylmalonate-semialdehyde dehydrogenase low > 109
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS12970 FAD-binding oxidoreductase 0.75 QEN71_RS37655 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 153
Azospirillum brasilense Sp245 0.42 AZOBR_RS08855 FAD-dependent oxidoreductase 0.55 AZOBR_RS22500 methylmalonate-semialdehyde dehydrogenase low > 97
Azospirillum sp. SherDot2 0.42 MPMX19_04887 Gamma-glutamylputrescine oxidoreductase 0.62 MPMX19_04040 Putative 3-oxopropanoate dehydrogenase low > 112
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_809 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) 0.57 PfGW456L13_2 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) low > 87
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.2201.1 glutamine synthetase family protein 0.41 Xcc-8004.3689.1 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) low > 74
Pseudomonas simiae WCS417 0.41 PS417_27720 FAD-dependent oxidoreductase 0.72 PS417_10925 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) low > 88
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS29395 FAD-binding oxidoreductase 0.72 PFLU_RS11260 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS29395 FAD-binding oxidoreductase 0.72 PFLU_RS11260 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 109
Shewanella amazonensis SB2B 0.40 Sama_2647 oxidoreductase (RefSeq) 0.62 Sama_2650 methylmalonate-semialdehyde dehydrogenase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.40 BWI76_RS10690 gamma-glutamylputrescine oxidoreductase 0.51 BWI76_RS03070 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (from data) low > 92
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0232 gamma-glutamylputrescine oxidase 0.63 Psyr_3271 methylmalonate-semialdehyde dehydrogenase (acylating) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0232 gamma-glutamylputrescine oxidase 0.63 Psyr_3271 methylmalonate-semialdehyde dehydrogenase (acylating) low > 86
Serratia liquefaciens MT49 0.40 IAI46_10540 FAD-binding oxidoreductase 0.53 IAI46_02640 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 86
Pseudomonas sp. RS175 0.40 PFR28_04402 Gamma-glutamylputrescine oxidoreductase 0.57 PFR28_05263 Putative 3-oxopropanoate dehydrogenase low > 88
Enterobacter asburiae PDN3 0.40 EX28DRAFT_1502 Glycine/D-amino acid oxidases (deaminating) 0.54 EX28DRAFT_0147 methylmalonic acid semialdehyde dehydrogenase low > 76
Shewanella sp. ANA-3 0.39 Shewana3_3093 FAD dependent oxidoreductase (RefSeq) 0.59 Shewana3_3107 methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.39 Psest_3795 Glycine/D-amino acid oxidases (deaminating) 0.57 Psest_3781 methylmalonic acid semialdehyde dehydrogenase low > 67
Shewanella loihica PV-4 0.39 Shew_0969 FAD dependent oxidoreductase (RefSeq) 0.60 Shew_0965 methylmalonate-semialdehyde dehydrogenase (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_09170 FAD-dependent oxidoreductase 0.64 AO353_21350 methylmalonate-semialdehyde dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_4388 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) 0.64 Pf6N2E2_515 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) low > 103
Shewanella oneidensis MR-1 0.39 SO1264 hypothetical oxidoreductase (NCBI ptt file) 0.44 SO1678 mmsA methylmalonate-semialdehyde dehydrogenase (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_6047 Nucleoside-diphosphate-sugar epimerases 0.64 Pf1N1B4_4277 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) low > 87
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_12605 FAD-dependent oxidoreductase 0.64 AO356_23175 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) low > 104
Pantoea sp. MT58 0.38 IAI47_07110 FAD-binding oxidoreductase 0.52 IAI47_01465 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 76
Pseudomonas putida KT2440 0.38 PP_3146 putative Oxidoreductase 0.58 PP_0597 methylmalonate-semialdehyde dehydrogenase 0.15 26
Pseudomonas sp. S08-1 0.38 OH686_22830 Gamma-glutamyl-putrescine oxidase 0.56 OH686_07305 methylmalonate-semialdehyde dehydrogenase (acylating) low > 80
Rhodospirillum rubrum S1H 0.37 Rru_A1019 FAD dependent oxidoreductase (NCBI) 0.54 Rru_A1542 Methylmalonate-semialdehyde dehydrogenase (NCBI) low > 58
Agrobacterium fabrum C58 0.37 Atu0194 oxidoreductase 0.57 Atu0205 methylmalonate-semialdehyde dehydrogenase low > 89
Marinobacter adhaerens HP15 0.34 HP15_944 FAD dependent oxidoreductase 0.78 HP15_2655 methylmalonate-semialdehyde dehydrogenase low > 73
Phaeobacter inhibens DSM 17395 0.33 PGA1_c11510 gamma-glutamylputrescine oxidoreductase PuuB 0.49 PGA1_c17300 methylmalonate-semialdehyde dehydrogenase low > 62
Sinorhizobium meliloti 1021 0.33 SMc01972 oxidoreductase 0.53 SMc00781 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) low > 103
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_03219 gamma-glutamylputrescine oxidase 0.70 H281DRAFT_03264 methylmalonate-semialdehyde dehydrogenase [acylating] low > 103
Dinoroseobacter shibae DFL-12 0.30 Dshi_2227 FAD dependent oxidoreductase (RefSeq) 0.49 Dshi_1747 methylmalonate-semialdehyde dehydrogenase (RefSeq) low > 64
Rhizobium sp. OAE497 0.29 ABIE40_RS03205 FAD-binding oxidoreductase 0.55 ABIE40_RS03335 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 107
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3084 FIG00553873: hypothetical protein 0.54 GFF888 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) low > 78
Caulobacter crescentus NA1000 0.25 CCNA_03229 FAD dependent oxidoreductase 0.52 CCNA_01360 Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_03229 FAD dependent oxidoreductase 0.52 CCNA_01360 malonate-semialdehyde dehydrogenase IolA low > 67
Acinetobacter radioresistens SK82 0.23 MPMX26_02004 Gamma-glutamylputrescine oxidoreductase 0.46 MPMX26_01550 Methylmalonate-semialdehyde dehydrogenase [acylating] — —
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS05800 FAD-binding oxidoreductase 0.67 ABZR87_RS19665 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 80
Herbaspirillum seropedicae SmR1 0.21 HSERO_RS01275 FAD-dependent oxidoreductase 0.67 HSERO_RS24005 methylmalonate-semialdehyde dehydrogenase low > 78
Bosea sp. OAE506 0.21 ABIE41_RS08075 FAD-binding oxidoreductase 0.57 ABIE41_RS23920 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 77
Ralstonia solanacearum UW163 0.21 UW163_RS04345 FAD-binding oxidoreductase 0.68 UW163_RS20405 methylmalonate-semialdehyde dehydrogenase (CoA acylating) — —
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS09245 FAD-binding oxidoreductase 0.68 RALBFv3_RS18725 methylmalonate-semialdehyde dehydrogenase (CoA acylating) low > 76
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS24610 FAD-dependent oxidoreductase 0.72 RR42_RS34225 methylmalonate-semialdehyde dehydrogenase low > 128
Ralstonia solanacearum PSI07 0.19 RPSI07_RS08030 FAD-binding oxidoreductase 0.68 RPSI07_RS04870 methylmalonate-semialdehyde dehydrogenase (CoA acylating) low > 81
Ralstonia solanacearum GMI1000 0.19 RS_RS17075 FAD-binding oxidoreductase 0.70 RS_RS12715 methylmalonate-semialdehyde dehydrogenase (CoA acylating) 0.28 74
Rhodopseudomonas palustris CGA009 0.19 TX73_013660 FAD-dependent oxidoreductase 0.57 TX73_017860 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 86
Variovorax sp. SCN45 0.18 GFF1857 FIG00553873: hypothetical protein 0.81 GFF5041 Malonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.18) low > 127
Alteromonas macleodii MIT1002 0.17 MIT1002_03149 Gamma-glutamylputrescine oxidoreductase 0.54 MIT1002_03462 Methylmalonate-semialdehyde dehydrogenase [acylating] low > 70
Dickeya dianthicola 67-19 0.13 HGI48_RS09905 FAD-dependent oxidoreductase 0.55 HGI48_RS03730 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 71
Dickeya dianthicola ME23 0.13 DZA65_RS10240 FAD-dependent oxidoreductase 0.55 DZA65_RS03855 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 75
Pectobacterium carotovorum WPP14 0.12 HER17_RS21315 FAD-binding oxidoreductase 0.54 HER17_RS14440 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 75
Dickeya dadantii 3937 0.12 DDA3937_RS09900 FAD-dependent oxidoreductase 0.55 DDA3937_RS03670 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 74
Castellaniella sp019104865 MT123 0.10 ABCV34_RS06250 FAD-binding oxidoreductase 0.71 ABCV34_RS07430 CoA-acylating methylmalonate-semialdehyde dehydrogenase low > 48

Not shown: 20 genomes with orthologs for GFF2043 only; 6 genomes with orthologs for GFF1895 only