Conservation of cofitness between GFF817 and GFF1683 in Hydrogenophaga sp. GW460-11-11-14-LB1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 1.0 GFF1683 Protein involved in catabolism of external DNA 0.70 17
Variovorax sp. OAS795 0.53 ABID97_RS23860 RsmD family RNA methyltransferase 0.58 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 91
Variovorax sp. SCN45 0.51 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.57 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 39
Ralstonia solanacearum UW163 0.44 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.39 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.39 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Ralstonia solanacearum GMI1000 0.44 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS02815 methyltransferase 0.41 BPHYT_RS06880 competence protein ComJ low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.40 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Paraburkholderia graminis OAS925 0.39 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.40 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS01990 methyltransferase 0.39 RR42_RS09005 competence protein ComJ low > 128
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS20695 methyltransferase 0.43 HSERO_RS10595 competence protein ComJ low > 78
Pectobacterium carotovorum WPP14 0.34 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.31 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 AO356_08990 lactate dehydrogenase low > 104
Marinobacter adhaerens HP15 0.32 HP15_3491 conserved hypothetical protein 0.23 HP15_2563 protein containing DUF519 low > 73
Pseudomonas sp. RS175 0.32 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.23 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Castellaniella sp019104865 MT123 0.32 ABCV34_RS10145 RsmD family RNA methyltransferase 0.38 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.31 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Escherichia coli ECRC102 0.32 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECOR27 0.32 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 57
Escherichia coli ECRC101 0.32 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 0.32 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC99 0.32 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Enterobacter sp. TBS_079 0.32 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.32 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Escherichia coli ECRC98 0.32 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.33 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BL21 0.32 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.32 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 60
Escherichia coli ECOR38 0.32 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 85
Escherichia coli Nissle 1917 0.32 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 52
Escherichia coli ECRC62 0.32 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia fergusonii Becca 0.32 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.32 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.24 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Escherichia coli BW25113 0.32 b3465 yhhF predicted methyltransferase (NCBI) 0.31 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.32 GFF515 Protein involved in catabolism of external DNA low > 78
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 59
Rhodanobacter denitrificans MT42 0.31 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 63
Erwinia tracheiphila SCR3 0.31 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.32 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Shewanella amazonensis SB2B 0.31 Sama_3469 hypothetical protein (RefSeq) 0.27 Sama_3563 hypothetical protein (RefSeq) low > 62
Dickeya dianthicola 67-19 0.31 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.23 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Klebsiella michiganensis M5al 0.31 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 52
Serratia liquefaciens MT49 0.30 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Rahnella sp. WP5 0.30 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.33 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Dickeya dianthicola ME23 0.30 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Pseudomonas fluorescens SBW25 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas simiae WCS417 0.30 PS417_26825 16S rRNA methyltransferase 0.24 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.24 Pf1N1B4_1481 Protein involved in catabolism of external DNA — —
Lysobacter sp. OAE881 0.30 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.26 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Pseudomonas sp. S08-1 0.29 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.26 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Shewanella loihica PV-4 0.29 Shew_3607 putative methyltransferase (RefSeq) 0.30 Shew_3648 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.29 Shewana3_3973 putative methyltransferase (RefSeq) 0.29 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Shewanella oneidensis MR-1 0.29 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.29 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.28 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.21 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J low > 36
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Pantoea sp. MT58 0.27 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.32 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.25 39
Pseudomonas putida KT2440 0.27 PP_5114 putative adenine methyltransferase 0.25 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Pseudomonas stutzeri RCH2 0.27 Psest_0255 RNA methyltransferase, RsmD family 0.27 Psest_0408 Protein involved in catabolism of external DNA — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.24 PGA1_c26480 Protein involved in catabolism of external DNA low > 62

Not shown: 6 genomes with orthologs for GFF817 only; 16 genomes with orthologs for GFF1683 only