Conservation of cofitness between EX31_RS19675 and EX31_RS08830 in Rahnella sp. WP5

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS19675 TSUP family transporter 1.0 EX31_RS08830 DNA mismatch repair endonuclease MutL 0.34 5
Serratia liquefaciens MT49 0.79 IAI46_18015 TSUP family transporter 0.71 IAI46_01615 DNA mismatch repair endonuclease MutL low > 86
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0277 Predicted permeases 0.63 EX28DRAFT_3367 DNA mismatch repair protein MutL low > 76
Enterobacter sp. TBS_079 0.76 MPMX20_03262 putative membrane transporter protein YfcA 0.64 MPMX20_00451 DNA mismatch repair protein MutL low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1948 Putative membrane protein YfcA 0.62 GFF823 DNA mismatch repair protein MutL low > 78
Pantoea sp. MT58 0.75 IAI47_06160 TSUP family transporter 0.63 IAI47_02580 DNA mismatch repair endonuclease MutL low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS20425 hypothetical protein 0.61 BWI76_RS02525 DNA mismatch repair protein MutL — —
Escherichia coli ECOR38 0.71 HEPCGN_21830 yfcA putative membrane transporter protein YfcA 0.62 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL low > 87
Escherichia fergusonii Becca 0.71 EFB2_01531 putative membrane transporter protein YfcA 0.62 EFB2_04365 DNA mismatch repair protein MutL low > 86
Escherichia coli ECRC99 0.71 KEDOAH_05570 yfcA putative membrane transporter protein YfcA 0.61 KEDOAH_15890 mutL DNA mismatch repair endonuclease MutL — —
Escherichia coli BL21 0.71 ECD_02252 TauE/TSUP family inner membrane protein 0.62 ECD_04037 methyl-directed mismatch repair protein low > 61
Escherichia coli Nissle 1917 0.71 ECOLIN_RS13480 sulfite exporter TauE/SafE family protein 0.62 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL — —
Escherichia coli ECRC101 0.71 MCAODC_13665 yfcA putative membrane transporter protein YfcA 0.61 MCAODC_02780 mutL DNA mismatch repair endonuclease MutL low > 87
Escherichia coli ECRC100 0.71 OKFHMN_22625 yfcA putative membrane transporter protein YfcA 0.61 OKFHMN_12265 mutL DNA mismatch repair endonuclease MutL low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01378 putative membrane transporter protein YfcA 0.62 OHPLBJKB_03872 DNA mismatch repair protein MutL low > 73
Escherichia coli ECOR27 0.71 NOLOHH_14260 yfcA putative membrane transporter protein YfcA 0.62 NOLOHH_04530 mutL DNA mismatch repair endonuclease MutL low > 75
Escherichia coli ECRC98 0.71 JDDGAC_26585 yfcA putative membrane transporter protein YfcA 0.61 JDDGAC_15905 mutL DNA mismatch repair endonuclease MutL low > 86
Escherichia coli ECRC102 0.71 NIAGMN_20400 yfcA putative membrane transporter protein YfcA 0.61 NIAGMN_10115 mutL DNA mismatch repair endonuclease MutL — —
Escherichia coli BW25113 0.71 b2327 yfcA conserved inner membrane protein (NCBI) 0.62 b4170 mutL DNA mismatch repair protein (NCBI) low > 76
Escherichia coli ECRC62 0.71 BNILDI_13180 yfcA putative membrane transporter protein YfcA 0.62 BNILDI_06960 mutL DNA mismatch repair endonuclease MutL low > 75
Pectobacterium carotovorum WPP14 0.71 HER17_RS06945 sulfite exporter TauE/SafE family protein 0.65 HER17_RS02575 DNA mismatch repair endonuclease MutL low > 75
Erwinia tracheiphila SCR3 0.69 LU632_RS07785 sulfite exporter TauE/SafE family protein 0.62 LU632_RS02045 mutL DNA mismatch repair endonuclease MutL 0.45 54
Dickeya dadantii 3937 0.69 DDA3937_RS14570 TSUP family transporter 0.62 DDA3937_RS18620 DNA mismatch repair endonuclease MutL low > 74
Dickeya dianthicola 67-19 0.65 HGI48_RS14520 TSUP family transporter 0.62 HGI48_RS18555 DNA mismatch repair endonuclease MutL low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS15455 TSUP family transporter 0.62 DZA65_RS19690 DNA mismatch repair endonuclease MutL low > 75
Shewanella sp. ANA-3 0.54 Shewana3_2613 hypothetical protein (RefSeq) 0.40 Shewana3_0595 mutL DNA mismatch repair protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1266 hypothetical protein (RefSeq) 0.38 Sama_3027 mutL DNA mismatch repair protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.53 SO2846 conserved hypothetical protein (NCBI ptt file) 0.39 SO0601 mutL DNA mismatch repair protein MutL (NCBI ptt file) low > 76
Azospirillum sp. SherDot2 0.51 MPMX19_00682 putative membrane transporter protein YfcA 0.21 MPMX19_01619 DNA mismatch repair protein MutL low > 112
Azospirillum brasilense Sp245 0.50 AZOBR_RS10405 membrane protein 0.22 AZOBR_RS05025 DNA mismatch repair protein MutL low > 97
Shewanella loihica PV-4 0.48 Shew_2464 hypothetical protein (RefSeq) 0.38 Shew_0564 DNA mismatch repair protein MutL (RefSeq) low > 60
Castellaniella sp019104865 MT123 0.45 ABCV34_RS12215 TSUP family transporter 0.24 ABCV34_RS08785 DNA mismatch repair endonuclease MutL low > 48
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_12070 hypothetical protein 0.43 CSW01_01825 DNA mismatch repair protein MutL low > 62
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_4150 Predicted permeases 0.20 Ga0059261_0371 DNA mismatch repair protein MutL low > 68
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_369 Putative membrane protein YfcA 0.33 PfGW456L13_156 DNA mismatch repair protein MutL low > 87
Lysobacter sp. OAE881 0.38 ABIE51_RS11860 TSUP family transporter 0.28 ABIE51_RS08065 DNA mismatch repair endonuclease MutL low > 62
Phaeobacter inhibens DSM 17395 0.37 PGA1_c36170 Predicted permeases 0.21 PGA1_c32740 DNA mismatch repair protein MutL low > 62
Pseudomonas sp. RS175 0.31 PFR28_02189 putative membrane transporter protein YfcA 0.33 PFR28_05119 DNA mismatch repair protein MutL low > 88
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_4779 Membrane protein, putative 0.33 Pf1N1B4_1414 DNA mismatch repair protein MutL — —
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_1267 Membrane protein, putative 0.34 Pf6N2E2_3616 DNA mismatch repair protein MutL 0.21 16
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_25900 hypothetical protein 0.33 AO356_08665 DNA mismatch repair protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_26530 hypothetical protein 0.33 AO353_13135 DNA mismatch repair protein low > 101
Pseudomonas simiae WCS417 0.30 PS417_12880 membrane protein 0.33 PS417_02480 DNA mismatch repair protein — —
Pseudomonas stutzeri RCH2 0.29 Psest_2079 Predicted permeases 0.36 Psest_0681 DNA mismatch repair protein MutL low > 67
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS13560 TSUP family transporter 0.33 PFLU_RS02560 DNA mismatch repair endonuclease MutL low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS13560 TSUP family transporter 0.33 PFLU_RS02560 DNA mismatch repair endonuclease MutL low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_2454 Protein of unknown function DUF81 0.33 Psyr_0570 DNA mismatch repair protein MutL low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_2454 Protein of unknown function DUF81 0.33 Psyr_0570 DNA mismatch repair protein MutL low > 86
Ralstonia solanacearum GMI1000 0.27 RS_RS16720 membrane protein 0.26 RS_RS12850 DNA mismatch repair protein MutL low > 80
Ralstonia solanacearum PSI07 0.26 RPSI07_RS08365 membrane protein 0.26 RPSI07_RS12070 DNA mismatch repair endonuclease MutL low > 81
Pseudomonas sp. S08-1 0.26 OH686_03525 hypothetical protein 0.34 OH686_09480 DNA mismatch repair protein MutL low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF1891 FIG011065: hypothetical protein 0.24 GFF5485 DNA mismatch repair protein MutL low > 90
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS04180 TSUP family transporter 0.26 ABZR87_RS00870 DNA mismatch repair endonuclease MutL low > 80
Acidovorax sp. GW101-3H11 0.25 Ac3H11_3324 FIG011065: hypothetical protein 0.24 Ac3H11_313 DNA mismatch repair protein MutL low > 79
Dechlorosoma suillum PS 0.25 Dsui_3484 putative permease 0.26 Dsui_1551 DNA mismatch repair protein MutL low > 51
Pseudomonas putida KT2440 0.25 PP_0487 conserved membrane protein of unknown function 0.34 PP_4896 DNA mismatch repair protein MutL low > 96
Fusobacterium nucleatum SB010 0.24 HUW76_01290 TSUP family transporter 0.17 HUW76_07720 DNA mismatch repair endonuclease MutL low > 35
Acinetobacter radioresistens SK82 0.24 MPMX26_02777 putative membrane transporter protein YfcA 0.24 MPMX26_01207 DNA mismatch repair protein MutL low > 36
Variovorax sp. SCN45 0.24 GFF5022 FIG011065: hypothetical protein 0.25 GFF4800 DNA mismatch repair protein MutL low > 127
Ralstonia solanacearum UW163 0.23 UW163_RS04705 membrane protein 0.27 UW163_RS08395 DNA mismatch repair endonuclease MutL — —
Variovorax sp. OAS795 0.23 ABID97_RS04095 TSUP family transporter 0.24 ABID97_RS20310 DNA mismatch repair endonuclease MutL low > 91
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS23970 membrane protein 0.26 HSERO_RS04190 DNA mismatch repair protein low > 78
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS20255 membrane protein 0.26 RR42_RS17205 DNA mismatch repair protein low > 128
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.5298.1 FIG011065: hypothetical protein 0.29 Xcc-8004.2256.1 DNA mismatch repair protein MutL low > 74
Paraburkholderia sabiae LMG 24235 0.11 QEN71_RS15530 sulfite exporter TauE/SafE family protein 0.26 QEN71_RS26435 DNA mismatch repair endonuclease MutL low > 153
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS17725 sulfite exporter TauE/SafE family protein 0.27 RALBFv3_RS05230 DNA mismatch repair endonuclease MutL low > 76
Marinobacter adhaerens HP15 0.10 HP15_2204 membrane protein containing DUF81 0.32 HP15_2501 DNA mismatch repair protein mutL low > 73

Not shown: 6 genomes with orthologs for EX31_RS19675 only; 10 genomes with orthologs for EX31_RS08830 only