| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03303 | | branched-chain amino acid ABC transporter ATPase | 1.0 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | 0.57 | 30 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_08555 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS19755 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | low | > 55 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00368 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | 1.00 | EFB2_00657 | | tRNA pseudouridine synthase B | low | > 86 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_07290 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | low | > 87 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_16760 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | low | > 80 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_20390 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | low | > 86 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_14530 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_11380 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_02950 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b3454 | livF | ATP-binding component of leucine transport (VIMSS) | 1.00 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_15580 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 1.00 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_00249 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | 1.00 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.97 | GFF552 | | Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) | 0.95 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.95 | MPMX20_04330 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | 0.91 | MPMX20_04071 | | tRNA pseudouridine synthase B | low | > 85 |
| Klebsiella michiganensis M5al | 0.95 | BWI76_RS26330 | | ABC transporter ATP-binding protein | 0.91 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.93 | EX28DRAFT_4286 | | ABC-type branched-chain amino acid transport systems, ATPase component | 0.92 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.88 | LU632_RS19235 | livF | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.74 | LU632_RS21050 | truB | tRNA pseudouridine(55) synthase TruB | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.88 | HER17_RS00515 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.78 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Dickeya dadantii 3937 | 0.88 | DDA3937_RS00680 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.77 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | 0.45 | 50 |
| Dickeya dianthicola 67-19 | 0.88 | HGI48_RS20710 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.76 | HGI48_RS03250 | | tRNA pseudouridine(55) synthase TruB | low | > 71 |
| Rahnella sp. WP5 | 0.86 | EX31_RS14785 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.75 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | 0.28 | 54 |
| Pantoea sp. MT58 | 0.86 | IAI47_01585 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.74 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | low | > 76 |
| Serratia liquefaciens MT49 | 0.79 | IAI46_00980 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | 0.82 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.70 | HSERO_RS08290 | | leucine/isoleucine/valine transporter ATP-binding subunit | 0.41 | HSERO_RS17985 | | tRNA pseudouridine synthase B | low | > 78 |
| Pseudomonas syringae pv. syringae B728a | 0.68 | Psyr_3849 | | L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein | 0.48 | Psyr_4178 | | tRNA pseudouridine synthase B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.68 | Psyr_3849 | | L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein | 0.48 | Psyr_4178 | | tRNA pseudouridine synthase B | low | > 86 |
| Marinobacter adhaerens HP15 | 0.67 | HP15_3059 | | high-affinity branched-chain amino acid ABC transporter, ATP-binding protein | 0.48 | HP15_3065 | | tRNA pseudouridine synthase B | low | > 73 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS14405 | | leucine/isoleucine/valine transporter ATP-binding subunit | 0.39 | RR42_RS12835 | | tRNA pseudouridine synthase B | low | > 128 |
| Pseudomonas stutzeri RCH2 | 0.65 | Psest_1308 | | ABC-type branched-chain amino acid transport systems, ATPase component | 0.50 | Psest_0983 | | tRNA pseudouridine 55 synthase | — | — |
| Pseudomonas putida KT2440 | 0.64 | PP_1137 | | high-affinity branched-chain amino acid transporter, ATP binding | 0.48 | PP_4710 | | tRNA pseudouridine 55 synthase | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.64 | AO356_05340 | | ABC transporter ATP-binding protein | 0.49 | AO356_07400 | | pseudouridine synthase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.64 | PS417_06595 | | ABC transporter ATP-binding protein | 0.48 | PS417_23960 | | pseudouridine synthase | — | — |
| Pseudomonas sp. RS175 | 0.64 | PFR28_00536 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | 0.49 | PFR28_00092 | | tRNA pseudouridine synthase B | — | — |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS06625 | | ABC transporter ATP-binding protein | 0.49 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS06625 | | ABC transporter ATP-binding protein | 0.49 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | low | > 109 |
| Pseudomonas sp. S08-1 | 0.64 | OH686_04625 | | Branched-chain amino acid ABC transporter, ATP-binding protein LivF | 0.48 | OH686_17155 | | tRNA pseudouridine(55) synthase | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_4611 | | Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) | 0.49 | PfGW456L13_5086 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_2926 | | ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 2 LivF (from data) | 0.49 | Pf6N2E2_3351 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.63 | AO353_17105 | | ABC transporter ATP-binding protein | 0.49 | AO353_05550 | | pseudouridine synthase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.63 | Pf1N1B4_3214 | | Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) | 0.49 | Pf1N1B4_1159 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 87 |
| Rhodospirillum rubrum S1H | 0.60 | Rru_A1748 | | ABC transporter component (NCBI) | 0.29 | Rru_A3783 | | tRNA pseudouridine synthase B (NCBI) | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.58 | AMB_RS09120 | | ABC transporter ATP-binding protein | 0.29 | AMB_RS20810 | | tRNA pseudouridine(55) synthase TruB | low | > 64 |
| Azospirillum sp. SherDot2 | 0.57 | MPMX19_06005 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | 0.30 | MPMX19_02524 | | tRNA pseudouridine synthase B | — | — |
| Sinorhizobium meliloti 1021 | 0.55 | SMc01948 | | high-affinity branched-chain amino acid ABC transporter ATP-binding protein | 0.30 | SMc00321 | | tRNA pseudouridine synthase B | 0.29 | 94 |
| Rhizobium sp. OAE497 | 0.55 | ABIE40_RS14700 | | ABC transporter ATP-binding protein | 0.28 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | low | > 107 |
| Agrobacterium fabrum C58 | 0.55 | Atu2424 | | ABC transporter, nucleotide binding/ATPase protein | 0.28 | Atu0085 | | tRNA pseudouridine 55 synthase | low | > 89 |
| Bosea sp. OAE506 | 0.54 | ABIE41_RS13620 | | ABC transporter ATP-binding protein | 0.31 | ABIE41_RS04565 | | tRNA pseudouridine(55) synthase TruB | low | > 77 |
| Rhodopseudomonas palustris CGA009 | 0.54 | TX73_019725 | | ABC transporter ATP-binding protein | 0.32 | TX73_002255 | | tRNA pseudouridine(55) synthase TruB | low | > 86 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS27565 | | ABC transporter ATP-binding protein | 0.36 | ABID97_RS16475 | | tRNA pseudouridine(55) synthase TruB | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_005651 | | branched-chain amino acid transport system ATP-binding protein | 0.40 | ABIE53_001832 | | tRNA pseudouridine55 synthase | low | > 113 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.51 | DVU0716 | livF | branched-chain amino acid ABC transporter, ATP-binding protein (TIGR) | 0.21 | DVU0505 | truB | tRNA pseudouridine synthase B (TIGR) | low | > 55 |
| Variovorax sp. SCN45 | 0.49 | GFF2170 | | Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) | 0.35 | GFF220 | | tRNA pseudouridine(55) synthase (EC 5.4.99.25) | low | > 127 |
| Dechlorosoma suillum PS | 0.48 | Dsui_2057 | | ABC-type branched-chain amino acid transport systems, ATPase component | 0.43 | Dsui_2720 | | tRNA pseudouridine 55 synthase | low | > 51 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS17280 | | ABC transporter ATP-binding protein | 0.39 | RS_RS06470 | | tRNA pseudouridine(55) synthase TruB | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS00295 | | ABC transporter ATP-binding protein | 0.37 | ABZR87_RS11220 | | tRNA pseudouridine(55) synthase TruB | low | > 80 |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS16435 | | ABC transporter ATP-binding protein | 0.38 | UW163_RS13150 | | tRNA pseudouridine(55) synthase TruB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS23185 | | ABC transporter ATP-binding protein | 0.38 | RALBFv3_RS15690 | | tRNA pseudouridine(55) synthase TruB | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS00085 | | ABC transporter ATP-binding protein | 0.38 | RPSI07_RS17665 | | tRNA pseudouridine(55) synthase TruB | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_1692 | | ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, ATPase component 2 (from data) | 0.35 | Ac3H11_2865 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 79 |
| Synechococcus elongatus PCC 7942 | 0.46 | Synpcc7942_2492 | livF | ATPase | 0.23 | Synpcc7942_1222 | truB | tRNA pseudouridine synthase B | low | > 38 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS03120 | | ABC transporter ATP-binding protein | 0.40 | QEN71_RS23090 | | tRNA pseudouridine(55) synthase TruB | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_04059 | | amino acid/amide ABC transporter ATP-binding protein 2, HAAT family | 0.39 | H281DRAFT_05106 | | tRNA pseudouridine synthase B | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS15590 | | amino acid ABC transporter ATPase | 0.40 | BPHYT_RS08080 | | tRNA pseudouridine synthase B | low | > 109 |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c02620 | | high-affinity branched-chain amino acid transport ATP-binding protein LivF | 0.31 | PGA1_c32950 | | tRNA pseudouridine synthase B | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_1520 | | ABC transporter related (RefSeq) | 0.31 | Dshi_3042 | | tRNA pseudouridine synthase B (RefSeq) | low | > 64 |
| Shewanella loihica PV-4 | 0.41 | Shew_2606 | | ABC transporter-related protein (RefSeq) | 0.60 | Shew_2825 | | tRNA pseudouridine synthase B (RefSeq) | low | > 60 |
Not shown: 6 genomes with orthologs for ECD_03303 only; 17 genomes with orthologs for ECD_03033 only