Conservation of cofitness between ECD_00806 and ECD_00743 in Escherichia coli BL21

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 1.0 ECD_00743 8-amino-7-oxononanoate synthase 0.47 5
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 1.00 OHPLBJKB_02937 8-amino-7-oxononanoate synthase low > 73
Escherichia coli BW25113 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.98 b0776 bioF 8-amino-7-oxononanoate synthase (NCBI) low > 76
Escherichia coli ECRC62 1.00 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.89 BNILDI_21035 bioF 8-amino-7-oxononanoate synthase low > 75
Escherichia coli ECRC102 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.99 NIAGMN_04440 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli ECRC98 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.99 JDDGAC_10030 bioF 8-amino-7-oxononanoate synthase low > 86
Escherichia coli ECRC100 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.99 OKFHMN_06395 bioF 8-amino-7-oxononanoate synthase low > 80
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.91 ECOLIN_RS04135 8-amino-7-oxononanoate synthase — —
Escherichia coli ECRC99 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.99 KEDOAH_21515 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli ECOR27 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.89 NOLOHH_22765 bioF 8-amino-7-oxononanoate synthase low > 75
Escherichia coli ECOR38 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.88 HEPCGN_01645 bioF 8-amino-7-oxononanoate synthase low > 87
Escherichia coli ECRC101 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.99 MCAODC_25610 bioF 8-amino-7-oxononanoate synthase low > 87
Escherichia fergusonii Becca 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.91 EFB2_03329 8-amino-7-oxononanoate synthase low > 86
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.70 EX28DRAFT_2215 8-amino-7-oxononanoate synthase low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.69 MPMX20_01404 8-amino-7-oxononanoate synthase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.78 GFF672 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.65 BWI76_RS08765 8-amino-7-oxononanoate synthase low > 92
Pantoea sp. MT58 0.75 IAI47_13090 serine hydrolase 0.57 IAI47_13525 8-amino-7-oxononanoate synthase low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS12545 serine hydrolase 0.62 HER17_RS13455 8-amino-7-oxononanoate synthase low > 75
Serratia liquefaciens MT49 0.71 IAI46_08285 serine hydrolase 0.59 IAI46_06530 8-amino-7-oxononanoate synthase low > 86
Dickeya dadantii 3937 0.68 DDA3937_RS09420 serine hydrolase 0.64 DDA3937_RS08515 8-amino-7-oxononanoate synthase low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS09435 serine hydrolase 0.63 HGI48_RS08680 8-amino-7-oxononanoate synthase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.64 DZA65_RS08970 8-amino-7-oxononanoate synthase low > 75
Rahnella sp. WP5 0.65 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase 0.59 EX31_RS23700 8-amino-7-oxononanoate synthase low > 89
Alteromonas macleodii MIT1002 0.47 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.39 MIT1002_01380 8-amino-7-oxononanoate synthase — —
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.38 B158DRAFT_0865 8-amino-7-oxononanoate synthase — —
Pseudomonas putida KT2440 0.42 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.37 PP_0363 8-amino-7-oxononanoate synthase low > 96
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.39 PFR28_04102 8-amino-7-oxononanoate synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.39 PFLU_RS27645 8-amino-7-oxononanoate synthase low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.39 PFLU_RS27645 8-amino-7-oxononanoate synthase low > 109
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.37 AO356_14140 8-amino-7-oxononanoate synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.39 Pf1N1B4_2488 8-amino-7-oxononanoate synthase (EC 2.3.1.47) — —
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.38 Pf6N2E2_4761 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 103
Pseudomonas simiae WCS417 0.41 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.39 PS417_26000 8-amino-7-oxononanoate synthase low > 88
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.39 AO353_07520 8-amino-7-oxononanoate synthase low > 101
Pseudomonas stutzeri RCH2 0.41 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.38 Psest_0412 8-amino-7-oxononanoate synthase low > 67
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.39 PfGW456L13_1148 8-amino-7-oxononanoate synthase (EC 2.3.1.47) — —
Pseudomonas sp. S08-1 0.41 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.38 OH686_10350 8-amino-7-oxononanoate synthase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.40 Psyr_4686 8-amino-7-oxononanoate synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.40 Psyr_4686 8-amino-7-oxononanoate synthase low > 86
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.35 OKGIIK_13655 bioF 8-amino-7-oxononanoate synthase — —
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.38 ABIE51_RS01145 8-amino-7-oxononanoate synthase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.32 Xcc-8004.504.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 74
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.36 ABZR86_RS15835 8-amino-7-oxononanoate synthase — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.36 LRK55_RS09895 8-amino-7-oxononanoate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.36 LRK54_RS10255 8-amino-7-oxononanoate synthase low > 59
Marinobacter adhaerens HP15 0.39 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.39 HP15_2485 8-amino-7-oxononanoate synthase — —
Variovorax sp. SCN45 0.37 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.32 GFF144 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 127
Dechlorosoma suillum PS 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.38 Dsui_2881 8-amino-7-oxononanoate synthase low > 51
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.35 QEN71_RS01095 8-amino-7-oxononanoate synthase — —
Castellaniella sp019104865 MT123 0.36 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.29 ABCV34_RS15295 8-amino-7-oxononanoate synthase low > 48
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS02415 cytochrome C550 0.36 BPHYT_RS02160 8-amino-7-oxononanoate synthase low > 109
Paraburkholderia graminis OAS925 0.35 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.37 ABIE53_000579 8-amino-7-oxononanoate synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.35 H281DRAFT_02095 8-amino-7-oxononanoate synthase low > 103
Ralstonia solanacearum PSI07 0.35 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.29 RPSI07_RS16700 8-amino-7-oxononanoate synthase low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.31 RS_RS07435 8-amino-7-oxononanoate synthase low > 80
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.29 UW163_RS14155 8-amino-7-oxononanoate synthase — —
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.31 ABZR87_RS12340 8-amino-7-oxononanoate synthase low > 80
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.29 RALBFv3_RS00820 8-amino-7-oxononanoate synthase low > 76
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS01680 cytochrome C550 0.34 RR42_RS00930 8-amino-7-oxononanoate synthase low > 128
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS21530 cytochrome C550 0.36 HSERO_RS12245 8-amino-7-oxononanoate synthase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.36 GFF3995 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 90
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.33 ABID97_RS16260 8-amino-7-oxononanoate synthase low > 91
Acidovorax sp. GW101-3H11 0.31 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.33 Ac3H11_3830 8-amino-7-oxononanoate synthase (EC 2.3.1.47) — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.30 AMB_RS13875 8-amino-7-oxononanoate synthase — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.28 AZOBR_RS31105 8-amino-7-oxononanoate synthase — —
Phaeobacter inhibens DSM 17395 0.24 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.23 PGA1_c09130 8-amino-7-oxononanoate synthase BioF — —

Not shown: 7 genomes with orthologs for ECD_00806 only; 14 genomes with orthologs for ECD_00743 only