| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03400 | | tRNA pseudouridine(55) synthase TruB | 1.0 | CSW01_14125 | | 1,4-alpha-glucan branching enzyme | 0.49 | 15 |
| Serratia liquefaciens MT49 | 0.72 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | 0.44 | IAI46_23940 | | 1,4-alpha-glucan branching protein GlgB | low | > 86 |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | 0.43 | DDA3937_RS19745 | | 1,4-alpha-glucan branching protein GlgB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS03250 | | tRNA pseudouridine(55) synthase TruB | 0.44 | HGI48_RS19855 | | 1,4-alpha-glucan branching protein GlgB | low | > 71 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS03245 | | tRNA pseudouridine(55) synthase TruB | 0.44 | DZA65_RS20930 | | 1,4-alpha-glucan branching protein GlgB | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.68 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | 0.44 | HER17_RS01485 | | 1,4-alpha-glucan branching enzyme | low | > 75 |
| Klebsiella michiganensis M5al | 0.68 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | 0.44 | BWI76_RS26215 | | glycogen-branching enzyme | low | > 92 |
| Pantoea sp. MT58 | 0.67 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | 0.44 | IAI47_01680 | | 1,4-alpha-glucan branching enzyme | low | > 76 |
| Erwinia amylovora T8 | 0.67 | OLJFJH_07250 | | tRNA pseudouridine(55) synthase TruB | 0.44 | OLJFJH_04260 | | 1 4-alpha-glucan branching enzyme | low | > 58 |
| Escherichia coli ECRC98 | 0.67 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | JDDGAC_20515 | glgB | 1,4-alpha-glucan branching enzyme | low | > 86 |
| Escherichia coli ECOR38 | 0.67 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | HEPCGN_15700 | glgB | 1,4-alpha-glucan branching enzyme | low | > 87 |
| Escherichia coli ECRC100 | 0.67 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | OKFHMN_16885 | glgB | 1,4-alpha-glucan branching enzyme | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | 0.44 | OHPLBJKB_00269 | | 1,4-alpha-glucan branching enzyme GlgB | low | > 73 |
| Escherichia coli ECRC99 | 0.67 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | KEDOAH_11255 | glgB | 1,4-alpha-glucan branching enzyme | — | — |
| Escherichia coli Nissle 1917 | 0.67 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | 0.45 | ECOLIN_RS19640 | | 1,4-alpha-glucan branching enzyme | low | > 55 |
| Escherichia coli BL21 | 0.67 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | 0.44 | ECD_03284 | | 1,4-alpha-glucan branching enzyme | low | > 61 |
| Escherichia coli ECRC102 | 0.67 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | NIAGMN_14655 | glgB | 1,4-alpha-glucan branching enzyme | — | — |
| Escherichia coli BW25113 | 0.67 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | 0.44 | b3432 | glgB | glycogen branching enzyme (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.67 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | MCAODC_07415 | glgB | 1,4-alpha-glucan branching enzyme | low | > 87 |
| Escherichia fergusonii Becca | 0.67 | EFB2_00657 | | tRNA pseudouridine synthase B | 0.45 | EFB2_00387 | | 1,4-alpha-glucan branching enzyme GlgB | low | > 86 |
| Escherichia coli ECOR27 | 0.67 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | NOLOHH_08675 | glgB | 1,4-alpha-glucan branching enzyme | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.67 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.44 | GFF575 | | 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | low | > 78 |
| Escherichia coli ECRC62 | 0.67 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | 0.44 | BNILDI_02840 | glgB | 1,4-alpha-glucan branching enzyme | low | > 75 |
| Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | 0.44 | EX28DRAFT_4115 | | alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.66 | MPMX20_04071 | | tRNA pseudouridine synthase B | 0.44 | MPMX20_04314 | | 1,4-alpha-glucan branching enzyme GlgB | low | > 85 |
| Rahnella sp. WP5 | 0.65 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | 0.45 | EX31_RS05025 | | 1,4-alpha-glucan branching enzyme | low | > 89 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_1032 | | tRNA pseudouridine synthase B (RefSeq) | 0.42 | Shewana3_2934 | | glycogen branching enzyme (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.64 | Shew_2825 | | tRNA pseudouridine synthase B (RefSeq) | 0.43 | Shew_1168 | | glycogen branching enzyme (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.63 | Sama_0963 | | pseudouridylate synthase (RefSeq) | 0.43 | Sama_2453 | | 1,4-alpha-glucan branching enzyme (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_01773 | | tRNA pseudouridine synthase B | 0.53 | MIT1002_02399 | | 1,4-alpha-glucan branching enzyme GlgB | — | — |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_0983 | | tRNA pseudouridine 55 synthase | 0.45 | Psest_2158 | | alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_4178 | | tRNA pseudouridine synthase B | 0.46 | Psyr_2491 | | glycogen branching enzyme | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_4178 | | tRNA pseudouridine synthase B | 0.46 | Psyr_2491 | | glycogen branching enzyme | low | > 86 |
| Pseudomonas putida KT2440 | 0.46 | PP_4710 | | tRNA pseudouridine 55 synthase | 0.47 | PP_4058 | | 1,4-alpha-glucan branching enzyme | low | > 96 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_3065 | | tRNA pseudouridine synthase B | 0.39 | HP15_1712 | | glycogen branching enzyme | low | > 73 |
| Pseudomonas sp. DMC3 | 0.46 | GFF4990 | | tRNA pseudouridine synthase B | 0.45 | GFF3495 | | 1,4-alpha-glucan branching enzyme GlgB | low | > 89 |
| Pseudomonas sp. BP01 | 0.46 | JOY50_RS26845 | truB | tRNA pseudouridine(55) synthase TruB | 0.47 | JOY50_RS06760 | glgB | 1,4-alpha-glucan branching protein GlgB | low | > 84 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_5086 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.44 | PfGW456L13_3253 | | 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_05550 | | pseudouridine synthase | 0.44 | AO353_22945 | | glycogen branching protein | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_1159 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.45 | Pf1N1B4_4678 | | 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_3351 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.46 | Pf6N2E2_2117 | | 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | low | > 103 |
| Pseudomonas sp. RS175 | 0.45 | PFR28_00092 | | tRNA pseudouridine synthase B | 0.47 | PFR28_01319 | | 1,4-alpha-glucan branching enzyme GlgB | — | — |
| Pseudomonas sp. S08-1 | 0.44 | OH686_17155 | | tRNA pseudouridine(55) synthase | 0.45 | OH686_01540 | | 1,4-alpha-glucan branching enzyme | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_07400 | | pseudouridine synthase | 0.46 | AO356_01245 | | glycogen branching protein | low | > 104 |
| Pseudomonas sp. SVBP6 | 0.44 | COO64_RS15160 | truB | tRNA pseudouridine(55) synthase TruB | 0.46 | COO64_RS24775 | glgB | 1,4-alpha-glucan branching protein GlgB | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | 0.45 | PFLU_RS13485 | | 1,4-alpha-glucan branching protein GlgB | low | > 109 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_23960 | | pseudouridine synthase | 0.45 | PS417_12805 | | glycogen branching protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | 0.45 | PFLU_RS13485 | | 1,4-alpha-glucan branching protein GlgB | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS17985 | | tRNA pseudouridine synthase B | 0.43 | HSERO_RS11650 | | glycogen branching protein | low | > 78 |
| Pseudomonas aeruginosa PA14 | 0.43 | IKLFDK_29890 | | tRNA pseudouridine(55) synthase TruB | 0.46 | IKLFDK_10535 | | 1 4-alpha-glucan branching protein GlgB | low | > 101 |
| Methylophilus sp. DMC18 | 0.42 | GFF2846 | | tRNA pseudouridine synthase B | 0.41 | GFF1244 | | 1,4-alpha-glucan branching enzyme GlgB | low | > 43 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS06470 | | tRNA pseudouridine(55) synthase TruB | 0.44 | RS_RS18305 | | glycogen-branching enzyme | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_001832 | | tRNA pseudouridine55 synthase | 0.44 | ABIE53_004826 | | 1,4-alpha-glucan branching enzyme | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS17665 | | tRNA pseudouridine(55) synthase TruB | 0.43 | RPSI07_RS00885 | | 1,4-alpha-glucan branching protein GlgB | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS23090 | | tRNA pseudouridine(55) synthase TruB | 0.45 | QEN71_RS17730 | | 1,4-alpha-glucan branching protein GlgB | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS08080 | | tRNA pseudouridine synthase B | 0.45 | BPHYT_RS33780 | | glycogen branching protein | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_05106 | | tRNA pseudouridine synthase B | 0.45 | H281DRAFT_06050 | | 1,4-alpha-glucan branching enzyme | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS11220 | | tRNA pseudouridine(55) synthase TruB | 0.45 | ABZR87_RS17215 | | 1,4-alpha-glucan branching protein GlgB | 0.58 | 55 |
| Variovorax sp. OAS795 | 0.37 | ABID97_RS16475 | | tRNA pseudouridine(55) synthase TruB | 0.43 | ABID97_RS04550 | | 1,4-alpha-glucan branching protein GlgB | low | > 91 |
| Variovorax sp. SCN45 | 0.36 | GFF220 | | tRNA pseudouridine(55) synthase (EC 5.4.99.25) | 0.42 | GFF6333 | | 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | low | > 127 |
| Xanthobacter sp. DMC5 | 0.36 | GFF2293 | | tRNA pseudouridine synthase B | 0.44 | GFF1455 | | 1,4-alpha-glucan branching enzyme GlgB | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.34 | Xcc-8004.2004.1 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.45 | Xcc-8004.186.1 | | 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | low | > 74 |
| Rhodopseudomonas palustris CGA009 | 0.33 | TX73_002255 | | tRNA pseudouridine(55) synthase TruB | 0.44 | TX73_018885 | | 1,4-alpha-glucan branching protein GlgB | — | — |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_02524 | | tRNA pseudouridine synthase B | 0.46 | MPMX19_03849 | | 1,4-alpha-glucan branching enzyme GlgB | — | — |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS04565 | | tRNA pseudouridine(55) synthase TruB | 0.44 | ABIE41_RS01220 | | 1,4-alpha-glucan branching protein GlgB | low | > 77 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS20810 | | tRNA pseudouridine(55) synthase TruB | 0.44 | AMB_RS15430 | | 1,4-alpha-glucan branching protein GlgB | — | — |
| Agrobacterium fabrum C58 | 0.29 | Atu0085 | | tRNA pseudouridine 55 synthase | 0.43 | Atu4077 | | glycogen branching protein | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc00321 | | tRNA pseudouridine synthase B | 0.43 | SMc03922 | | glycogen branching protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.28 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | 0.45 | ABIE40_RS30590 | | 1,4-alpha-glucan branching protein GlgB | low | > 107 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A3783 | | tRNA pseudouridine synthase B (NCBI) | 0.45 | Rru_A2576 | | 1,4-alpha-glucan branching enzyme (NCBI) | — | — |
| Fusobacterium nucleatum SB010 | 0.26 | HUW76_06175 | | tRNA pseudouridine(55) synthase TruB | 0.29 | HUW76_05870 | | 1,4-alpha-glucan branching protein GlgB | low | > 35 |
| Synechocystis sp000284455 PCC 6803 | 0.23 | SGL_RS18050 | | tRNA pseudouridine(55) synthase TruB | 0.41 | SGL_RS12820 | | 1,4-alpha-glucan branching enzyme | low | > 51 |
| Synechococcus elongatus PCC 7942 | 0.20 | Synpcc7942_1222 | truB | tRNA pseudouridine synthase B | 0.43 | Synpcc7942_1085 | glgB | glycogen branching enzyme | low | > 38 |
Not shown: 18 genomes with orthologs for CSW01_03400 only; 9 genomes with orthologs for CSW01_14125 only