Conservation of cofitness between CSW01_03410 and CSW01_13635 in Vibrio cholerae E7946 ATCC 55056

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03410 polyribonucleotide nucleotidyltransferase 1.0 CSW01_13635 thiol:disulfide interchange protein DsbD 0.82 9
Pantoea sp. MT58 0.78 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.43 IAI47_17335 protein-disulfide reductase DsbD low > 76
Klebsiella michiganensis M5al 0.77 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.47 BWI76_RS02315 protein-disulfide reductase DsbD low > 92
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.46 EX28DRAFT_3333 Thiol:disulfide interchange protein — —
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS09100 polyribonucleotide nucleotidyltransferase 0.44 PagCFBP13505_RS09505 protein-disulfide reductase DsbD low > 74
Dickeya dadantii 3937 0.77 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.43 DDA3937_RS02705 protein-disulfide reductase DsbD low > 74
Klebsiella pneumoniae MKP103 0.77 KDGMDA_05875 polyribonucleotide nucleotidyltransferase 0.45 KDGMDA_10805 Thiol:disulfide interchange protein DsbD low > 95
Dickeya dianthicola 67-19 0.77 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.42 HGI48_RS02680 protein-disulfide reductase DsbD low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.42 DZA65_RS02835 protein-disulfide reductase DsbD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 0.47 OHPLBJKB_03907 Thiol:disulfide interchange protein DsbD low > 74
Escherichia coli BL21 0.77 ECD_03031 polynucleotide phosphorylase/polyadenylase 0.47 ECD_04006 thiol:disulfide interchange protein and activator of DsbC low > 61
Enterobacter sp. TBS_079 0.77 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.45 MPMX20_00416 Thiol:disulfide interchange protein DsbD — —
Escherichia coli BW25113 0.77 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 0.47 b4136 dipZ thiol:disulfide interchange protein precursor (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.46 GFF2016 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) low > 78
Escherichia coli ECRC100 0.77 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 0.47 OKFHMN_12450 dsbD protein-disulfide reductase DsbD low > 79
Escherichia coli ECOR38 0.77 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 0.46 HEPCGN_10675 dsbD protein-disulfide reductase DsbD — —
Escherichia coli ECRC101 0.77 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 0.46 MCAODC_02960 dsbD protein-disulfide reductase DsbD low > 87
Escherichia coli ECRC98 0.77 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 0.47 JDDGAC_16085 dsbD protein-disulfide reductase DsbD low > 87
Escherichia coli ECRC99 0.77 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 0.47 KEDOAH_15715 dsbD protein-disulfide reductase DsbD — —
Escherichia coli ECOR27 0.77 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 0.47 NOLOHH_04715 dsbD protein-disulfide reductase DsbD low > 76
Escherichia coli ECRC102 0.77 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 0.47 NIAGMN_10295 dsbD protein-disulfide reductase DsbD — —
Escherichia coli ECRC62 0.77 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 0.47 BNILDI_06775 dsbD protein-disulfide reductase DsbD low > 75
Escherichia coli Nissle 1917 0.77 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 0.47 ECOLIN_RS24030 protein-disulfide reductase DsbD low > 55
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_13960 pnp polyribonucleotide nucleotidyltransferase 0.40 IJEDHG_07065 Thiol:disulfide interchange protein DsbD — —
Escherichia fergusonii Becca 0.77 EFB2_00659 Polyribonucleotide nucleotidyltransferase 0.47 EFB2_04399 Thiol:disulfide interchange protein DsbD low > 86
Erwinia tracheiphila SCR3 0.77 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.40 LU632_RS01840 protein-disulfide reductase DsbD — —
Rahnella sp. WP5 0.76 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.46 EX31_RS08975 protein-disulfide reductase DsbD low > 89
Erwinia amylovora T8 0.76 OLJFJH_07265 polyribonucleotide nucleotidyltransferase 0.42 OLJFJH_02625 protein-disulfide reductase DsbD low > 58
Pectobacterium carotovorum WPP14 0.76 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.47 HER17_RS18850 protein-disulfide reductase DsbD — —
Serratia liquefaciens MT49 0.76 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.45 IAI46_01465 protein-disulfide reductase DsbD low > 87
Shewanella loihica PV-4 0.74 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.42 Shew_3266 dipZ thiol:disulfide interchange protein precursor (RefSeq) — —
Shewanella amazonensis SB2B 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.42 Sama_0538 dipZ thiol:disulfide interchange protein precursor (RefSeq) — —
Alteromonas macleodii MIT1002 0.73 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.38 MIT1002_03939 Thiol:disulfide interchange protein DsbD precursor — —
Shewanella oneidensis MR-1 0.72 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.44 SO0696 dsbD thiol:disulfide interchange protein DsbD (NCBI ptt file) — —
Shewanella sp. ANA-3 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.43 Shewana3_3576 dipZ thiol:disulfide interchange protein precursor (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase 0.32 B158DRAFT_0153 Thiol:disulfide interchange protein — —
Dechlorosoma suillum PS 0.66 Dsui_2718 polyribonucleotide nucleotidyltransferase 0.31 Dsui_0718 thiol:disulfide interchange protein — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase 0.29 HSERO_RS00715 thiol:disulfide interchange protein — —
Paraburkholderia graminis OAS925 0.63 ABIE53_001586 polyribonucleotide nucleotidyltransferase 0.26 ABIE53_000167 thiol:disulfide interchange protein DsbD low > 113
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase 0.23 H281DRAFT_05598 thiol:disulfide interchange protein DsbD — —
Pseudomonas aeruginosa PUPa3 0.63 DQ20_RS52590 pnp;go_function=polyribonucleotide polyribonucleotide nucleotidyltransferase 0.24 DQ20_RS55390 protein-disulfide reductase DsbD — —
Pseudomonas aeruginosa PA14 0.63 IKLFDK_29900 polyribonucleotide nucleotidyltransferase 0.24 IKLFDK_12170 Thiol:disulfide interchange protein DsbD 2 low > 98
Pseudomonas aeruginosa MRSN321 0.63 DY961_RS09440 pnp;go_function=polyribonucleotide polyribonucleotide nucleotidyltransferase 0.24 DY961_RS05265 protein-disulfide reductase DsbD — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase 0.23 BPHYT_RS17970 thiol:disulfide interchange protein — —
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS24175 polyribonucleotide nucleotidyltransferase 0.23 QEN71_RS28120 protein-disulfide reductase DsbD — —
Pseudomonas sp. S08-1 0.62 OH686_17165 polyribonucleotide nucleotidyltransferase 0.23 OH686_07580 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase — —
Marinobacter adhaerens HP15 0.62 HP15_3063 polynucleotide phosphorylase/polyadenylase 0.30 HP15_2101 membrane protein containing cytochrome c assembly protein, transmembrane region domain — —
Methylophilus sp. DMC18 0.62 GFF2832 Polyribonucleotide nucleotidyltransferase 0.29 GFF2039 Thiol:disulfide interchange protein DsbD — —
Pseudomonas stutzeri RCH2 0.61 Psest_0986 polyribonucleotide nucleotidyltransferase 0.27 Psest_1603 Thiol:disulfide interchange protein — —
Pseudomonas sp. SVBP6 0.61 COO64_RS15150 pnp polyribonucleotide nucleotidyltransferase 0.24 COO64_RS18765 dsbD protein-disulfide reductase DsbD low > 93
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_07390 polyribonucleotide nucleotidyltransferase 0.28 AO356_02870 thiol:disulfide interchange protein — —
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS05485 polynucleotide phosphorylase/polyadenylase 0.29 RR42_RS19110 thiol:disulfide interchange protein — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3349 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.28 Pf6N2E2_2398 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) — —
Pseudomonas sp. BP01 0.61 JOY50_RS26855 pnp polyribonucleotide nucleotidyltransferase 0.26 JOY50_RS23140 protein-disulfide reductase DsbD — —
Ralstonia solanacearum GMI1000 0.61 RS_RS10375 polyribonucleotide nucleotidyltransferase 0.27 RS_RS14985 thiol:disulfide interchange protein DsbD — —
Pseudomonas putida KT2440 0.61 PP_4708 Polyribonucleotide nucleotidyltransferase 0.25 PP_0561 thiol/disulfide interchange protein 1 — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase 0.27 RALBFv3_RS07045 protein-disulfide reductase DsbD low > 76
Ralstonia solanacearum UW163 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase 0.27 UW163_RS06570 protein-disulfide reductase DsbD — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.27 Pf1N1B4_210 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) — —
Pseudomonas sp. RS175 0.61 PFR28_00094 Polyribonucleotide nucleotidyltransferase 0.27 PFR28_01029 Thiol:disulfide interchange protein DsbD — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.24 Psyr_4398 Protein-disulfide reductase — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_5084 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.28 PfGW456L13_2298 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase 0.28 ABZR87_RS02695 protein-disulfide reductase DsbD — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.24 Psyr_4398 Protein-disulfide reductase — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase 0.28 RPSI07_RS10195 protein-disulfide reductase DsbD low > 81
Pseudomonas sp. DMC3 0.61 GFF4992 Polyribonucleotide nucleotidyltransferase 0.29 GFF4549 Thiol:disulfide interchange protein DsbD — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_05540 polyribonucleotide nucleotidyltransferase 0.25 AO353_19365 thiol:disulfide interchange protein — —
Castellaniella sp019104865 MT123 0.60 ABCV34_RS01240 polyribonucleotide nucleotidyltransferase 0.27 ABCV34_RS03205 protein-disulfide reductase DsbD — —
Pseudomonas segetis P6 0.60 ACVTMO_RS05975 pnp polyribonucleotide nucleotidyltransferase 0.26 ACVTMO_RS20330 protein-disulfide reductase DsbD — —
Pseudomonas simiae WCS417 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.26 PS417_19525 thiol:disulfide interchange protein — —
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_04941 Polyribonucleotide nucleotidyltransferase 0.25 GEMAOFIL_04105 Thiol:disulfide interchange protein DsbD — —
Pseudomonas orientalis W4I3 0.59 QF045_RS26205 polyribonucleotide nucleotidyltransferase 0.26 QF045_RS21665 protein-disulfide reductase DsbD — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.25 PFLU_RS21490 protein-disulfide reductase DsbD — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.25 PFLU_RS21490 protein-disulfide reductase DsbD — —
Acinetobacter radioresistens SK82 0.58 MPMX26_00275 Polyribonucleotide nucleotidyltransferase 0.21 MPMX26_03164 Thiol:disulfide interchange protein DsbD 0.59 7
Acinetobacter baumannii LAC-4 0.58 RR41_RS17185 polyribonucleotide nucleotidyltransferase 0.24 RR41_RS00770 protein-disulfide reductase DsbD low > 55
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS13355 polyribonucleotide nucleotidyltransferase 0.17 A4249_RS11500 protein-disulfide reductase DsbD — —

Not shown: 44 genomes with orthologs for CSW01_03410 only; 0 genomes with orthologs for CSW01_13635 only