Conservation of cofitness between CSW01_12410 and CSW01_12715 in Vibrio cholerae E7946 ATCC 55056

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 CSW01_12715 ribonuclease 0.55 5
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.65 SO0576 PhoH family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.65 Shewana3_0575 PhoH family protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.43 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.66 Sama_3130 PhoH family protein (RefSeq) low > 62
Shewanella loihica PV-4 0.41 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.68 Shew_0458 PhoH family protein (RefSeq) low > 60
Pseudomonas sp. DMC3 0.40 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 GFF1924 hypothetical protein low > 89
Pseudomonas stutzeri RCH2 0.40 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.50 Psest_3171 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 67
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.38 B158DRAFT_2442 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 40
Pseudomonas aeruginosa PA14 0.39 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 IKLFDK_20220 ribonuclease low > 100
Pseudomonas simiae WCS417 0.39 PS417_20155 23S rRNA methyltransferase 0.48 PS417_04860 ATPase 0.23 20
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 GEMAOFIL_01175 hypothetical protein low > 93
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.49 Pf6N2E2_5391 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 103
Pseudomonas segetis P6 0.38 MPMX49_01653 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 MPMX49_03563 hypothetical protein low > 75
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 PFLU_RS04930 PhoH family protein low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 PFLU_RS04930 PhoH family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.48 Pf1N1B4_978 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 87
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.48 Psyr_1066 PhoH-like protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.48 Psyr_1066 PhoH-like protein low > 86
Pseudomonas sp. S08-1 0.38 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.49 OH686_07080 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 80
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_19055 23S rRNA methyltransferase 0.48 AO356_17330 ATPase low > 104
Pseudomonas sp. SVBP6 0.38 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 COO64_RS11615 PhoH family protein low > 93
Pseudomonas sp. RS175 0.37 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 PFR28_03552 hypothetical protein low > 88
Marinobacter adhaerens HP15 0.37 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.47 HP15_728 PhoH family protein low > 73
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.49 PfGW456L13_1688 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 87
Pseudomonas putida KT2440 0.36 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 PP_1291 PhoH family protein low > 96
Pseudomonas sp. BP01 0.36 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 JOY50_RS15335 PhoH family protein low > 84
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_02715 23S rRNA methyltransferase 0.48 AO353_04665 ATPase low > 101
Rhodanobacter denitrificans MT42 0.34 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 LRK55_RS14785 PhoH family protein low > 63
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 ABZR86_RS00770 PhoH family protein low > 74
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 LRK53_RS13550 PhoH family protein low > 59
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 LRK54_RS15070 PhoH family protein low > 59
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 OKGIIK_03840 ylaK phosphate starvation-inducible protein PhoH low > 53
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.36 Xcc-8004.3089.1 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 74
Alteromonas macleodii MIT1002 0.32 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 MIT1002_00661 Phosphate starvation-inducible protein PsiH low > 70
Dechlorosoma suillum PS 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.37 Dsui_1996 PhoH family protein low > 51
Lysobacter sp. OAE881 0.31 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 ABIE51_RS07980 PhoH family protein low > 62
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 ABZR87_RS11390 PhoH family protein low > 80
Methylophilus sp. DMC18 0.30 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 GFF2430 hypothetical protein low > 43
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS14825 23S rRNA methyltransferase 0.38 HSERO_RS10405 phosphate starvation protein PhoH low > 78
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS13170 23S rRNA methyltransferase 0.38 RR42_RS12560 phosphate starvation protein PhoH low > 128
Ralstonia solanacearum UW163 0.29 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 UW163_RS13265 PhoH family protein — —
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 RALBFv3_RS15820 PhoH family protein low > 76
Ralstonia solanacearum GMI1000 0.29 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 RS_RS06600 PhoH family protein low > 80
Ralstonia solanacearum PSI07 0.28 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 RPSI07_RS17545 PhoH family protein low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.36 GFF3930 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 90
Synechococcus elongatus PCC 7942 0.21 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.25 Synpcc7942_2521 gpsA Nucleotide binding protein, PINc low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.25 Echvi_1142 Predicted ATPase related to phosphate starvation-inducible protein PhoH low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 ABZR88_RS09455 PhoH family protein low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.16 DVU0442 phoH-related protein (TIGR) low > 55
Bacteroides thetaiotaomicron VPI-5482 0.17 BT0643 RNA methyltransferase (NCBI ptt file) 0.23 BT1334 PhoH-like protein (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.25 CA264_05845 ribonuclease low > 74
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 HMPREF1181_RS10875 PhoH family protein low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 CA265_RS09450 ribonuclease low > 88
Mycobacterium tuberculosis H37Rv 0.10 Rv2689c Conserved alanine and valine and glycine rich protein 0.19 Rv1095 Probable PHOH-like protein PhoH2 (phosphate starvation-inducible protein PSIH) low > 58

Not shown: 61 genomes with orthologs for CSW01_12410 only; 2 genomes with orthologs for CSW01_12715 only