Conservation of cofitness between CSW01_04865 and CSW01_12445 in Vibrio cholerae E7946 ATCC 55056

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 CSW01_12445 DNA repair protein RecO 0.40 18
Pantoea sp. MT58 0.85 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 IAI47_04890 DNA repair protein RecO low > 76
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS03285 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.61 PagCFBP13505_RS14780 DNA repair protein RecO low > 74
Dickeya dadantii 3937 0.84 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 DDA3937_RS15725 DNA repair protein RecO — —
Dickeya dianthicola ME23 0.84 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 DZA65_RS16890 DNA repair protein RecO low > 75
Dickeya dianthicola 67-19 0.83 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 HGI48_RS15810 DNA repair protein RecO — —
Pectobacterium carotovorum WPP14 0.83 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 HER17_RS05825 DNA repair protein RecO low > 75
Shewanella amazonensis SB2B 0.82 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.26 Sama_0882 DNA repair protein RecO (RefSeq) low > 62
Rahnella sp. WP5 0.82 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 EX31_RS21845 DNA repair protein RecO low > 89
Shewanella loihica PV-4 0.82 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.27 Shew_1056 DNA repair protein RecO (RefSeq) low > 60
Serratia liquefaciens MT49 0.82 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.61 IAI46_19540 DNA repair protein RecO low > 86
Escherichia coli BW25113 0.82 b0636 ybeA hypothetical protein (NCBI) 0.62 b2565 recO DNA repair protein RecO (NCBI) low > 76
Escherichia coli Nissle 1917 0.82 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 ECOLIN_RS14520 DNA repair protein RecO — —
Shewanella sp. ANA-3 0.82 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.28 Shewana3_3024 DNA repair protein RecO (RefSeq) low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.63 OHPLBJKB_01142 DNA repair protein RecO — —
Escherichia coli BL21 0.82 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.62 ECD_02459 gap repair protein — —
Shewanella oneidensis MR-1 0.81 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.28 SO1350 recO DNA repair protein RecO (NCBI ptt file) low > 76
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 KEDOAH_06800 recO DNA repair protein RecO — —
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 NOLOHH_13095 recO DNA repair protein RecO low > 76
Erwinia tracheiphila SCR3 0.81 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 LU632_RS15375 recO DNA repair protein RecO low > 74
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 MCAODC_11950 recO DNA repair protein RecO — —
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 BNILDI_11895 recO DNA repair protein RecO — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_16400 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.64 KDGMDA_28435 DNA repair protein RecO low > 95
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 JDDGAC_25085 recO DNA repair protein RecO — —
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 HEPCGN_20565 recO DNA repair protein RecO low > 88
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 NIAGMN_19190 recO DNA repair protein RecO — —
Escherichia coli ECRC100 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 OKFHMN_21420 recO DNA repair protein RecO low > 79
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.63 EFB2_01331 DNA repair protein RecO low > 86
Enterobacter sp. TBS_079 0.81 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.56 MPMX20_03436 DNA repair protein RecO low > 85
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.63 EX28DRAFT_0081 DNA replication and repair protein RecO — —
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_02460 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 IJEDHG_01180 recO DNA repair protein RecO low > 61
Erwinia amylovora T8 0.80 OLJFJH_17220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.61 OLJFJH_10265 DNA repair protein RecO low > 58
Klebsiella michiganensis M5al 0.80 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 BWI76_RS21310 DNA repair protein RecO low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.62 GFF2473 DNA recombination and repair protein RecO low > 78
Alteromonas macleodii MIT1002 0.77 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.31 MIT1002_00790 Recombination protein O — —
Pseudomonas sp. S08-1 0.66 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.28 OH686_20090 DNA repair protein RecO low > 80
Marinobacter adhaerens HP15 0.66 HP15_604 conserved hypothetical protein CHP00246 0.32 HP15_786 DNA repair protein RecO low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_4366 Protein of unknown function DUF163 0.25 Psyr_3949 DNA replication and repair protein RecO low > 86
Pseudomonas stutzeri RCH2 0.65 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.28 Psest_3090 DNA repair protein RecO low > 67
Pseudomonas sp. RS175 0.65 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.27 PFR28_03521 DNA repair protein RecO low > 88
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_4366 Protein of unknown function DUF163 0.25 Psyr_3949 DNA replication and repair protein RecO — —
Pseudomonas segetis P6 0.65 MPMX49_01051 Ribosomal RNA large subunit methyltransferase H 0.28 MPMX49_01410 DNA repair protein RecO low > 75
Pseudomonas sp. SVBP6 0.65 COO64_RS15615 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 COO64_RS16565 recO DNA repair protein RecO low > 93
Pseudomonas sp. DMC3 0.65 GFF3879 Ribosomal RNA large subunit methyltransferase H 0.27 GFF1959 DNA repair protein RecO low > 89
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_06480 50S rRNA methyltransferase 0.28 AO353_04500 DNA repair protein RecO low > 101
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.28 Pf6N2E2_5428 DNA recombination and repair protein RecO low > 103
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.27 Pf1N1B4_890 DNA recombination and repair protein RecO — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_15305 50S rRNA methyltransferase 0.27 AO356_17505 DNA repair protein RecO low > 104
Pseudomonas sp. BP01 0.65 JOY50_RS17695 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 JOY50_RS14705 recO DNA repair protein RecO low > 84
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_0085 rRNA large subunit m3Psi methyltransferase RlmH 0.29 B158DRAFT_2189 DNA replication and repair protein RecO low > 40
Pseudomonas aeruginosa PA14 0.64 IKLFDK_20650 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 IKLFDK_03315 DNA repair protein RecO 0.28 90
Pseudomonas fluorescens SBW25 0.64 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas simiae WCS417 0.64 PS417_24730 50S rRNA methyltransferase 0.27 PS417_05200 DNA recombination protein RecO — —
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.27 PfGW456L13_4838 DNA recombination and repair protein RecO low > 87
Pseudomonas putida KT2440 0.64 PP_4808 23S rRNA m3psi1915 methyltransferase 0.25 PP_1435 DNA repair protein RecO low > 96
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_05099 Ribosomal RNA large subunit methyltransferase H 0.27 GEMAOFIL_01246 DNA repair protein RecO — —
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 LRK54_RS16980 DNA repair protein RecO low > 59
Rhodanobacter denitrificans MT42 0.60 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 LRK55_RS16695 DNA repair protein RecO low > 63
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 ABZR86_RS07140 DNA repair protein RecO low > 74
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 OKGIIK_07860 recO DNA repair protein RecO low > 52
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS07250 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 LRK53_RS11965 DNA repair protein RecO low > 59
Lysobacter sp. OAE881 0.56 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.20 ABIE51_RS13850 DNA repair protein RecO low > 62
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 RPSI07_RS18965 DNA repair protein RecO low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 RS_RS05275 DNA repair protein RecO — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.24 Xcc-8004.3671.1 DNA recombination and repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 RALBFv3_RS14495 DNA repair protein RecO low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 UW163_RS11960 DNA repair protein RecO — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 ABZR87_RS10215 DNA repair protein RecO low > 80
Acinetobacter baumannii LAC-4 0.47 RR41_RS09070 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.16 RR41_RS04865 DNA repair protein RecO low > 55
Acinetobacter radioresistens SK82 0.47 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.21 MPMX26_02153 DNA repair protein RecO low > 36
Dechlorosoma suillum PS 0.44 Dsui_0451 hypothetical protein 0.23 Dsui_2462 DNA repair protein RecO low > 51
Methylophilus sp. DMC18 0.42 GFF827 Ribosomal RNA large subunit methyltransferase H 0.24 GFF2740 DNA repair protein RecO low > 43
Dinoroseobacter shibae DFL-12 0.27 Dshi_0088 protein of unknown function DUF163 (RefSeq) 0.12 Dshi_0203 DNA repair protein RecO (RefSeq) low > 64

Not shown: 37 genomes with orthologs for CSW01_04865 only; 0 genomes with orthologs for CSW01_12445 only