Conservation of cofitness between CSW01_03330 and CSW01_11925 in Vibrio cholerae E7946 ATCC 55056

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03330 transcription elongation factor GreA 1.0 CSW01_11925 TatD family deoxyribonuclease 0.47 19
Shewanella sp. ANA-3 0.71 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.29 Shewana3_1038 TatD-related deoxyribonuclease (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.29 SO1213 hydrolase, TatD family (NCBI ptt file) low > 76
Escherichia coli BW25113 0.68 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.41 b4378 yjjV predicted DNase (NCBI) low > 76
Escherichia fergusonii Becca 0.68 EFB2_00642 Transcription elongation factor GreA 0.41 EFB2_04068 putative metal-dependent hydrolase YjjV low > 86
Escherichia coli ECRC62 0.68 BNILDI_01690 greA transcription elongation factor GreA 0.42 BNILDI_08020 tatD metal-dependent hydrolase low > 75
Escherichia coli ECOR27 0.68 NOLOHH_09845 greA transcription elongation factor GreA 0.41 NOLOHH_03580 yjjV metal-dependent hydrolase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00519 Transcription elongation factor GreA 0.41 OHPLBJKB_03683 putative metal-dependent hydrolase YjjV low > 74
Escherichia coli ECRC101 0.68 MCAODC_08565 greA transcription elongation factor GreA 0.41 MCAODC_01775 yjjV metal-dependent hydrolase low > 87
Escherichia coli ECRC99 0.68 KEDOAH_10105 greA transcription elongation factor GreA 0.41 KEDOAH_16885 yjjV metal-dependent hydrolase — —
Escherichia coli BL21 0.68 ECD_03046 transcript cleavage factor 0.41 ECD_04254 putative DNase low > 61
Escherichia coli ECRC102 0.68 NIAGMN_15805 greA transcription elongation factor GreA 0.41 NIAGMN_09110 yjjV metal-dependent hydrolase low > 80
Escherichia coli ECOR38 0.68 HEPCGN_16920 greA transcription elongation factor GreA 0.41 HEPCGN_09265 tatD metal-dependent hydrolase low > 88
Escherichia coli ECRC98 0.68 JDDGAC_21670 greA transcription elongation factor GreA 0.41 JDDGAC_14855 yjjV metal-dependent hydrolase low > 87
Escherichia coli Nissle 1917 0.68 ECOLIN_RS18320 transcription elongation factor GreA 0.41 ECOLIN_RS25130 metal-dependent hydrolase — —
Escherichia coli ECRC100 0.68 OKFHMN_18045 greA transcription elongation factor GreA 0.41 OKFHMN_11260 yjjV metal-dependent hydrolase low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2922 Transcription elongation factor GreA 0.41 GFF1040 Putative deoxyribonuclease YjjV low > 78
Klebsiella pneumoniae MRSN742743 0.67 GJGHJB_00517 greA transcription elongation factor GreA 0.40 GJGHJB_04299 tatD Deoxyribonuclease low > 83
Klebsiella pneumoniae MKP103 0.67 KDGMDA_05975 transcription elongation factor GreA 0.41 KDGMDA_12390 metal-dependent hydrolase low > 94
Alteromonas macleodii MIT1002 0.67 MIT1002_01468 Transcript cleavage factor GreA 0.35 MIT1002_02710 putative deoxyribonuclease YjjV low > 70
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3232 transcription elongation factor GreA 0.42 EX28DRAFT_3587 Mg-dependent DNase — —
Enterobacter sp. TBS_079 0.66 MPMX20_04085 Transcription elongation factor GreA 0.42 MPMX20_00677 putative metal-dependent hydrolase YjjV low > 85
Klebsiella michiganensis M5al 0.66 BWI76_RS25160 transcription elongation factor GreA 0.41 BWI76_RS04120 metal-dependent hydrolase low > 92
Dickeya dadantii 3937 0.66 DDA3937_RS03015 transcription elongation factor GreA 0.41 DDA3937_RS02460 TatD family hydrolase — —
Pectobacterium carotovorum WPP14 0.65 HER17_RS18330 transcription elongation factor GreA 0.40 HER17_RS19045 TatD family hydrolase — —
Dickeya dianthicola 67-19 0.65 HGI48_RS03185 transcription elongation factor GreA 0.40 HGI48_RS02415 TatD family hydrolase low > 71
Pseudomonas aeruginosa PUPa3 0.65 NPBIFN_05060 greA transcription elongation factor GreA 0.35 NPBIFN_01428 tatD TatD family hydrolase low > 101
Dickeya dianthicola ME23 0.65 DZA65_RS03180 transcription elongation factor GreA 0.40 DZA65_RS02520 metal-dependent hydrolase low > 75
Pseudomonas aeruginosa MRSN321 0.65 PFGADD_04983 greA transcription elongation factor GreA 0.35 PFGADD_01407 tatD Hydrolase TatD low > 99
Pseudomonas aeruginosa PA14 0.65 IKLFDK_29820 transcription elongation factor GreA 0.35 IKLFDK_18190 TatD family deoxyribonuclease — —
Rahnella sp. WP5 0.64 EX31_RS08595 transcription elongation factor GreA 0.36 EX31_RS04070 deoxyribonuclease YjjV low > 89
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13516_RS17300 greA transcription elongation factor GreA 0.40 PagCFBP13516_RS03625 TatD family hydrolase low > 80
Pantoea sp. MT58 0.64 IAI47_17080 transcription elongation factor GreA 0.39 IAI47_03395 metal-dependent hydrolase low > 76
Erwinia amylovora T8 0.63 OLJFJH_07185 transcription elongation factor GreA 0.38 OLJFJH_01630 metal-dependent hydrolase low > 58
Serratia liquefaciens MT49 0.63 IAI46_01880 transcription elongation factor GreA 0.38 IAI46_02900 TatD family hydrolase low > 87
Acinetobacter radioresistens SK82 0.62 MPMX26_00765 Transcription elongation factor GreA 0.29 MPMX26_00479 putative metal-dependent hydrolase YjjV low > 36
Pseudomonas stutzeri RCH2 0.61 Psest_0969 transcription elongation factor GreA 0.32 Psest_0728 hydrolase, TatD family low > 67
Acinetobacter baumannii LAC-4 0.60 RR41_RS04150 transcription elongation factor GreA 0.29 RR41_RS16185 TatD family hydrolase — —
Pseudomonas sp. RS175 0.59 PFR28_00078 Transcription elongation factor GreA 0.32 PFR28_00103 putative metal-dependent hydrolase YjjV — —
Pseudomonas sp. S08-1 0.58 OH686_17085 Transcription elongation factor GreA 0.32 OH686_16550 Putative deoxyribonuclease YjjV low > 80
Pseudomonas segetis P6 0.58 ACVTMO_RS05890 greA transcription elongation factor GreA 0.32 ACVTMO_RS19300 TatD family hydrolase low > 75
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0617 transcription elongation factor GreA 0.32 B158DRAFT_2240 Mg-dependent DNase low > 40
Marinobacter adhaerens HP15 0.58 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.36 HP15_542 TatD-related deoxyribonuclease low > 73
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_07475 transcription elongation factor GreA 0.31 AO356_07345 hydrolase TatD — —
Erwinia tracheiphila SCR3 0.58 LU632_RS21165 greA transcription elongation factor GreA 0.38 LU632_RS02510 TatD family hydrolase low > 73
Erwinia tracheiphila HP pepo 2.2 0.58 IJEDHG_13865 greA transcription elongation factor GreA 0.37 IJEDHG_06420 metal-dependent hydrolase low > 61
Pseudomonas protegens RBAN4 0.58 FABNJH_04330 greA transcription elongation factor GreA 0.31 FABNJH_04455 yjjV Deoxyribonuclease YjjV — —
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3363 Transcription elongation factor GreA 0.32 Pf6N2E2_3341 Putative deoxyribonuclease YjjV — —
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.2911.1 Transcription elongation factor GreA 0.30 Xcc-8004.3493.1 Putative deoxyribonuclease YjjV low > 74
Pseudomonas sp. BP01 0.57 JOY50_RS26770 greA transcription elongation factor GreA 0.32 JOY50_RS19325 TatD family hydrolase low > 84
Pseudomonas putida KT2440 0.56 PP_4722 Transcription elongation factor GreA 0.29 PP_0791 putative hydrolase low > 96
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_4190 transcription elongation factor GreA 0.30 Psyr_0819 TatD-related deoxyribonuclease — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_4190 transcription elongation factor GreA 0.30 Psyr_0819 TatD-related deoxyribonuclease — —
Pseudomonas simiae WCS417 0.56 PS417_24035 transcription elongation factor GreA 0.31 PS417_03955 hydrolase TatD — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS14135 transcription elongation factor GreA 0.28 ABZR87_RS10420 TatD family hydrolase low > 80
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_5098 Transcription elongation factor GreA 0.31 PfGW456L13_5078 Putative deoxyribonuclease YjjV — —
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_05625 transcription elongation factor GreA 0.31 AO353_05495 hydrolase TatD low > 101
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_1171 Transcription elongation factor GreA 0.32 Pf1N1B4_1148 Putative deoxyribonuclease YjjV — —
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_04957 Transcription elongation factor GreA 0.30 GEMAOFIL_00995 putative metal-dependent hydrolase YjjV low > 96
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS25875 transcription elongation factor GreA 0.32 PFLU_RS04000 TatD family hydrolase low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS25875 transcription elongation factor GreA 0.32 PFLU_RS04000 TatD family hydrolase low > 109
Pseudomonas sp. SVBP6 0.55 COO64_RS15235 greA transcription elongation factor GreA 0.32 COO64_RS11265 TatD family hydrolase — —
Pseudomonas orientalis W4I3 0.55 QF045_RS26290 transcription elongation factor GreA 0.30 QF045_RS06930 TatD family hydrolase low > 93
Pseudomonas sp. DMC3 0.55 GFF4978 Transcription elongation factor GreA 0.31 GFF5001 putative metal-dependent hydrolase YjjV low > 89
Lysobacter sp. OAE881 0.54 ABIE51_RS11610 transcription elongation factor GreA 0.31 ABIE51_RS12580 TatD family hydrolase low > 62
Methylophilus sp. DMC18 0.53 GFF313 Transcription elongation factor GreA 0.28 GFF76 putative metal-dependent hydrolase YjjV low > 43
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS13505 transcription elongation factor GreA 0.25 RR42_RS06110 DNAase — —
Paraburkholderia graminis OAS925 0.53 ABIE53_003003 transcription elongation factor GreA 0.27 ABIE53_002767 TatD DNase family protein low > 113
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS04785 transcription elongation factor GreA 0.26 QEN71_RS05855 TatD family hydrolase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04404 GreA/GreB family elongation factor 0.27 H281DRAFT_00492 TatD DNase family protein low > 103
Acidovorax sp. GW101-3H11 0.50 Ac3H11_437 Transcription elongation factor GreA 0.26 Ac3H11_1737 Putative deoxyribonuclease YjjV 0.45 18
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4897 Transcription elongation factor GreA 0.26 GFF744 Putative deoxyribonuclease YjjV low > 90
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15540 transcription elongation factor GreA 0.28 ABCV34_RS04985 TatD family hydrolase low > 48
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS06930 transcription elongation factor GreA 0.27 HSERO_RS13935 DNAase — —
Variovorax sp. OAS795 0.47 ABID97_RS17070 transcription elongation factor GreA 0.25 ABID97_RS22725 TatD family hydrolase low > 91
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS11355 transcription elongation factor GreA 0.29 LRK53_RS12655 TatD family hydrolase low > 59
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_07290 greA transcription elongation factor GreA 0.28 OKGIIK_08515 DNAase low > 53
Rhodanobacter denitrificans MT42 0.43 LRK55_RS17860 transcription elongation factor GreA 0.29 LRK55_RS15885 TatD family hydrolase low > 63
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS18005 transcription elongation factor GreA 0.30 LRK54_RS16135 TatD family hydrolase low > 59
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS05595 transcription elongation factor GreA 0.29 ABZR86_RS06375 TatD family hydrolase low > 74

Not shown: 36 genomes with orthologs for CSW01_03330 only; 0 genomes with orthologs for CSW01_11925 only