Conservation of cofitness between CSW01_13285 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.91 19
Klebsiella pneumoniae MKP103 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase 0.62 KDGMDA_23845 cytochrome c maturation protein CcmE — —
Klebsiella pneumoniae MRSN742743 0.78 GJGHJB_00357 rpe ribulose-phosphate 3-epimerase 0.62 GJGHJB_02104 ccmE cytochrome c maturation protein CcmE — —
Shewanella oneidensis MR-1 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) — —
Shewanella sp. ANA-3 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) — —
Escherichia coli ECRC100 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC98 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF — —
Escherichia fergusonii Becca 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC62 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC101 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC99 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli BL21 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia coli ECRC102 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECOR27 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli BW25113 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) low > 76
Escherichia coli ECOR38 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 88
Shewanella loihica PV-4 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) — —
Shewanella amazonensis SB2B 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) — —
Serratia liquefaciens MT49 0.76 IAI46_23685 ribulose-phosphate 3-epimerase 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Pantoea sp. MT58 0.76 IAI47_01910 ribulose-phosphate 3-epimerase 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit — —
Pectobacterium carotovorum WPP14 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit low > 75
Erwinia amylovora T8 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase 0.63 OLJFJH_11100 heme lyase NrfEFG subunit NrfE — —
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13516_RS01910 rpe ribulose-phosphate 3-epimerase 0.65 PagCFBP13516_RS06280 heme lyase CcmF/NrfE family subunit — —
Rahnella sp. WP5 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit — —
Alteromonas macleodii MIT1002 0.74 MIT1002_00441 Ribulose-phosphate 3-epimerase 0.56 MIT1002_00965 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit — —
Pseudomonas sp. BP01 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase 0.49 JOY50_RS00480 heme lyase CcmF/NrfE family subunit — —
Pseudomonas simiae WCS417 0.71 PS417_25735 ribulose-phosphate 3-epimerase 0.52 PS417_08715 cytochrome C biogenesis protein CcmF — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.48 ABZR86_RS06445 heme lyase CcmF/NrfE family subunit — —
Pseudomonas segetis P6 0.71 ACVTMO_RS04395 rpe ribulose-phosphate 3-epimerase 0.55 ACVTMO_RS15395 heme lyase CcmF/NrfE family subunit — —
Pseudomonas stutzeri RCH2 0.71 Psest_3652 ribulose-phosphate 3-epimerase 0.51 Psest_1759 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. FW215-L2 0.71 GFF21 Ribulose-phosphate 3-epimerase 0.52 GFF1873 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.51 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas putida KT2440 0.71 PP_0415 ribulose-5-phosphate 3-epimerase 0.50 PP_4322 holocytochrome c synthetase — —
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase 0.51 GEMAOFIL_01875 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. SVBP6 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase 0.50 COO64_RS25715 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.51 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas aeruginosa PA14 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase 0.49 IKLFDK_07040 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas aeruginosa PUPa3 0.70 NPBIFN_00621 rpe ribulose-phosphate 3-epimerase 0.49 NPBIFN_03788 ccmF Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas aeruginosa MRSN321 0.70 PFGADD_00617 rpe ribulose-phosphate 3-epimerase 0.49 PFGADD_03747 ccmF Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_07240 ribulose phosphate epimerase 0.51 AO353_18875 cytochrome C biogenesis protein CcmF — —
Pseudomonas sp. RS175 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase 0.52 PFR28_00870 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas protegens RBAN4 0.70 FABNJH_28355 rpe ribulose-phosphate 3-epimerase 0.52 FABNJH_08750 ccmE cytochrome c maturation protein CcmE — —
Pseudomonas orientalis W4I3 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase 0.51 QF045_RS11430 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens GW456-L13 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.53 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_14410 ribulose phosphate epimerase 0.52 AO356_03635 cytochrome C biogenesis protein CcmF — —
Pseudomonas sp. S08-1 0.70 OH686_15115 ribulose-phosphate 3-epimerase 0.51 OH686_02635 cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. DMC3 0.69 GFF22 Ribulose-phosphate 3-epimerase 0.51 GFF2490 Cytochrome c-type biogenesis protein CcmF — —
Marinobacter adhaerens HP15 0.69 HP15_3286 ribulose-phosphate 3-epimerase-like protein 0.51 HP15_2281 cytochrome c assembly protein — —
Kangiella aquimarina DSM 16071 0.69 B158DRAFT_0267 ribulose-phosphate 3-epimerase 0.54 B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF — —
Lysobacter sp. OAE881 0.66 ABIE51_RS04135 ribulose-phosphate 3-epimerase 0.48 ABIE51_RS08700 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter sp000427505 FW510-R12 0.66 LRK53_RS17105 ribulose-phosphate 3-epimerase 0.45 LRK53_RS12730 heme lyase CcmF/NrfE family subunit — —
Dechlorosoma suillum PS 0.66 Dsui_0221 ribulose-phosphate 3-epimerase 0.53 Dsui_1172 c-type cytochrome biogenesis protein CcmF — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.47 Xcc-8004.3190.1 Cytochrome c heme lyase subunit CcmF — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase 0.48 LRK55_RS15815 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS11390 ribulose-phosphate 3-epimerase 0.48 LRK54_RS16065 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase 0.46 OKGIIK_08585 ccmF c-type cytochrome biogenesis protein CcmF — —
Xanthobacter sp. DMC5 0.57 GFF2441 Ribulose-phosphate 3-epimerase 0.41 GFF1779 Cytochrome c-type biogenesis protein CcmF — —
Azospirillum sp. SherDot2 0.56 MPMX19_02946 Ribulose-phosphate 3-epimerase 0.45 MPMX19_02533 Cytochrome c-type biogenesis protein CcmF — —
Rhodospirillum rubrum S1H 0.53 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) 0.43 Rru_A0035 Cytochrome c-type biogenesis protein CcmF (NCBI) — —
Magnetospirillum magneticum AMB-1 0.49 AMB_RS06980 ribulose-phosphate 3-epimerase 0.47 AMB_RS21250 heme lyase CcmF/NrfE family subunit — —
Sphingobium sp. HT1-2 0.47 GFF3274 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.36 GFF83 Cytochrome c heme lyase subunit CcmF — —
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_2240 ribulose-phosphate 3-epimerase 0.30 Ga0059261_0172 Cytochrome c biogenesis factor — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase 0.45 AZOBR_RS00740 heme lyase subunit CcmF — —
Agrobacterium fabrum C58 0.45 Atu1839 ribulose-phosphate 3-epimerase 0.44 Atu0975 cytochrome c-type synthesis protein — —
Sinorhizobium meliloti 1021 0.44 SMc00511 D-ribulose-5-phosphate 3-epimerase 0.42 SMc02363 cytochrome C-type biogenesis transmembrane protein low > 103
Rhizobium sp. OAE497 0.44 ABIE40_RS10105 ribulose-phosphate 3-epimerase 0.43 ABIE40_RS05685 heme lyase CcmF/NrfE family subunit — —
Caulobacter crescentus NA1000 0.44 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.38 CCNA_02848 heme chaperone-apocytochrome heme-lyase — —
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.38 CCNA_02848 heme chaperone-apocytochrome heme-lyase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.44 A4249_RS13160 ribulose-phosphate 3-epimerase 0.34 A4249_RS10825 heme lyase CcmF/NrfE family subunit — —
Phaeobacter inhibens DSM 17395 0.42 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe 0.41 PGA1_c17010 cytochrome c-type biogenesis protein CcmF — —
Rhodopseudomonas palustris CGA009 0.39 TX73_019755 ribulose-phosphate 3-epimerase 0.44 TX73_009900 heme lyase CcmF/NrfE family subunit — —

Not shown: 49 genomes with orthologs for CSW01_13285 only; 1 genomes with orthologs for CSW01_10265 only