| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06260 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 1.0 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | 0.53 | 16 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_3278 | cobT | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq) | 0.55 | Shewana3_1412 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.43 | SO1035 | cobT | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NCBI ptt file) | 0.55 | SO3138 | dctD | C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0762 | cobT | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq) | 0.55 | Sama_2213 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.42 | Shew_0714 | cobT | nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq) | 0.56 | Shew_1442 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS16120 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.51 | RR42_RS03980 | | Fis family transcriptional regulator | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS25130 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | QEN71_RS01375 | | sigma-54 dependent transcriptional regulator | low | > 153 |
| Dechlorosoma suillum PS | 0.39 | Dsui_0472 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.52 | Dsui_3486 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.38 | H281DRAFT_00139 | | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 0.51 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | low | > 103 |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS09190 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS04480 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.37 | BPHYT_RS04865 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | BPHYT_RS02520 | | Fis family transcriptional regulator | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.37 | RPSI07_RS12890 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.36 | RS_RS12035 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.35 | Echvi_3759 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.34 | Echvi_0196 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 79 |
| Rhodopseudomonas palustris CGA009 | 0.35 | TX73_010790 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.31 | TX73_013430 | | sigma-54 dependent transcriptional regulator | — | — |
| Bacteroides stercoris CC31F | 0.35 | HMPREF1181_RS15655 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.31 | HMPREF1181_RS16190 | | sigma-54-dependent Fis family transcriptional regulator | low | > 56 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS00075 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | ABZR87_RS06635 | | sigma-54 dependent transcriptional regulator | low | > 80 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_03275 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.31 | BACOVA_04200 | | Sigma-54 interaction domain protein | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3674 | | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 0.50 | Psyr_3913 | | Helix-turn-helix, Fis-type | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3674 | | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 0.50 | Psyr_3913 | | Helix-turn-helix, Fis-type | — | — |
| Pseudomonas aeruginosa PA14 | 0.32 | IKLFDK_06065 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | IKLFDK_27655 | | two-component system response regulator DctD | low | > 98 |
| Pseudomonas putida KT2440 | 0.32 | PP_1679 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | PP_0263 | | C4-dicarboxylate transport transcriptional regulatory protein | low | > 96 |
| Phocaeicola dorei CL03T12C01 | 0.32 | ABI39_RS16455 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.32 | ABI39_RS16590 | | sigma-54-dependent Fis family transcriptional regulator | low | > 72 |
| Pseudomonas aeruginosa PUPa3 | 0.32 | DQ20_RS46765 | cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | DQ20_RS50420 | dctD;inference=COORDINATES | two-component system response regulator DctD | low | > 101 |
| Phocaeicola vulgatus CL09T03C04 | 0.31 | HMPREF1058_RS01275 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.32 | HMPREF1058_RS01145 | | sigma-54-dependent Fis family transcriptional regulator | low | > 67 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS17335 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | — | — |
| Pseudomonas sp. RS175 | 0.31 | PFR28_03202 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | PFR28_03376 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 88 |
| Variovorax sp. SCN45 | 0.31 | GFF425 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) | 0.49 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.31 | DY961_RS06015 | cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | DY961_RS11680 | dctD;inference=COORDINATES | two-component system response regulator DctD | low | > 100 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_02605 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | AO353_16265 | | Fis family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_4236 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) | 0.50 | PfGW456L13_4775 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_3713 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) | 0.50 | Pf1N1B4_776 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_3006 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | Psest_4132 | | alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) | low | > 67 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_19170 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | AO356_18205 | | Fis family transcriptional regulator | low | > 104 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_04955 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | OH686_13325 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | 0.51 | 11 |
| Pseudomonas sp. BP01 | 0.30 | JOY50_RS27975 | cobT | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.51 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | low | > 84 |
| Pseudomonas orientalis W4I3 | 0.30 | QF045_RS22145 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | QF045_RS04425 | | sigma-54 dependent transcriptional regulator | low | > 93 |
| Pseudomonas segetis P6 | 0.30 | MPMX49_01824 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | MPMX49_00215 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 75 |
| Pseudomonas fluorescens FW300-N2E2 | 0.30 | Pf6N2E2_5744 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) | 0.49 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | — | — |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS09770 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.47 | HSERO_RS16810 | | Fis family transcriptional regulator | low | > 78 |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS03460 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.55 | AZOBR_RS21130 | | Fis family transcriptional regulator | — | — |
| Pseudomonas sp. SVBP6 | 0.27 | COO64_RS07215 | cobT | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.51 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | low | > 93 |
| Azospirillum sp. SherDot2 | 0.27 | MPMX19_00312 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.54 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | — | — |
| Xanthobacter sp. DMC5 | 0.27 | GFF3391 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | GFF2901 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | — | — |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS21995 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS21995 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas sp. DMC3 | 0.26 | GFF2554 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | GFF5115 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 89 |
| Bosea sp. OAE506 | 0.26 | ABIE41_RS21245 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.32 | ABIE41_RS16775 | | sigma-54 dependent transcriptional regulator | — | — |
| Rhizobium sp. OAE497 | 0.26 | ABIE40_RS10720 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | ABIE40_RS15425 | | sigma-54 dependent transcriptional regulator | low | > 107 |
| Pseudomonas lactucae CFBP13502 | 0.26 | GEMAOFIL_04203 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | GEMAOFIL_00486 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 96 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_20030 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | PS417_01305 | | Fis family transcriptional regulator | low | > 88 |
| Magnetospirillum magneticum AMB-1 | 0.24 | AMB_RS02805 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.48 | AMB_RS08380 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS11620 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | ECOLIN_RS23460 | | sigma-54 dependent transcriptional regulator | low | > 55 |
| Escherichia fergusonii Becca | 0.24 | EFB2_01898 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.49 | EFB2_04538 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.24 | SMc04214 | | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 0.50 | SM_b20613 | | C4-dicarboxylate transport transcriptional regulator | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_0788 | | Nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq) | 0.47 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_0625 | | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) | 0.38 | Ga0059261_0619 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 68 |
| Phaeobacter inhibens DSM 17395 | 0.23 | PGA1_c07570 | | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase CobT | 0.33 | PGA1_c13440 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | — | — |
| Sphingobium sp. HT1-2 | 0.22 | GFF828 | | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) | 0.33 | GFF159 | | hypothetical protein | low | > 95 |
| Agrobacterium fabrum C58 | 0.22 | Atu1890 | | cobyrinic acid synthase | 0.49 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | — | — |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A0667 | | Nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferase (NCBI) | 0.45 | Rru_A1435 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | low | > 58 |
Not shown: 31 genomes with orthologs for CSW01_06260 only; 11 genomes with orthologs for CSW01_09635 only