Conservation of cofitness between CSW01_03705 and CSW01_09385 in Vibrio cholerae E7946 ATCC 55056

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03705 chaperone protein ClpB 1.0 CSW01_09385 hypothetical protein 0.54 6
Shewanella amazonensis SB2B 0.80 Sama_2603 clpB protein (RefSeq) 0.66 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 62
Shewanella oneidensis MR-1 0.80 SO3577 clpB clpB protein (NCBI ptt file) 0.68 SO2883 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_3169 ATPase (RefSeq) 0.65 Shewana3_1637 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.80 Shew_2948 ATPase (RefSeq) 0.66 Shew_1832 hypothetical protein (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF4184 ClpB protein 0.74 GFF3472 UPF0229 protein YeaH low > 78
Alteromonas macleodii MIT1002 0.78 MIT1002_02677 Heat shock protein F84.1 0.69 MIT1002_01232 hypothetical protein low > 70
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB 0.74 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03461 Chaperone protein ClpB 0.74 MPMX20_01839 hypothetical protein low > 85
Dickeya dianthicola ME23 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB 0.71 DZA65_RS10725 YeaH/YhbH family protein low > 75
Klebsiella michiganensis M5al 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB 0.75 BWI76_RS11480 hypothetical protein low > 92
Escherichia coli ECRC101 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB 0.75 MCAODC_18705 yeaH UPF0229 protein YeaH low > 88
Escherichia coli ECOR27 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB 0.75 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC99 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB 0.75 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Escherichia coli ECOR38 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB 0.75 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 88
Escherichia coli ECRC62 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB 0.75 BNILDI_16020 yeaH UPF0229 protein YeaH low > 75
Escherichia coli ECRC98 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB 0.75 JDDGAC_01280 yeaH UPF0229 protein YeaH low > 87
Escherichia coli BL21 0.78 ECD_02482 protein disaggregation chaperone 0.75 ECD_01753 UPF0229 family protein — —
Escherichia coli BW25113 0.78 b2592 clpB protein disaggregation chaperone (NCBI) 0.75 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli ECRC102 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB 0.75 NIAGMN_01360 yeaH UPF0229 protein YeaH low > 80
Escherichia coli ECRC100 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB 0.75 OKFHMN_26705 yeaH UPF0229 protein YeaH low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01114 Chaperone protein ClpB 0.75 OHPLBJKB_01948 hypothetical protein low > 74
Escherichia fergusonii Becca 0.78 EFB2_01298 Chaperone protein ClpB 0.75 EFB2_02210 hypothetical protein low > 86
Klebsiella pneumoniae MKP103 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB 0.76 KDGMDA_19155 UPF0229 protein KPK_3252 low > 95
Escherichia coli Nissle 1917 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB 0.75 ECOLIN_RS09945 YeaH/YhbH family protein — —
Dickeya dianthicola 67-19 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB 0.72 HGI48_RS10250 YeaH/YhbH family protein low > 71
Pectobacterium carotovorum WPP14 0.77 HER17_RS05410 ATP-dependent chaperone ClpB 0.73 HER17_RS11155 YeaH/YhbH family protein low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB 0.71 DDA3937_RS10240 YeaH/YhbH family protein low > 74
Serratia liquefaciens MT49 0.77 IAI46_03995 ATP-dependent chaperone ClpB 0.75 IAI46_14380 YeaH/YhbH family protein low > 86
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB 0.73 PagCFBP13505_RS02755 YeaH/YhbH family protein low > 74
Pantoea sp. MT58 0.77 IAI47_04435 ATP-dependent chaperone ClpB 0.73 IAI47_08920 YeaH/YhbH family protein low > 76
Rahnella sp. WP5 0.76 EX31_RS07560 ATP-dependent chaperone ClpB 0.73 EX31_RS06255 YeaH/YhbH family protein low > 89
Erwinia amylovora T8 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB 0.72 OLJFJH_13195 UPF0229 protein ETA_15540 low > 58
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB 0.71 IJEDHG_22595 yeaH UPF0229 protein ETA_15540 low > 61
Erwinia tracheiphila SCR3 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB 0.71 LU632_RS13015 YeaH/YhbH family protein low > 74
Marinobacter adhaerens HP15 0.74 HP15_529 protein disaggregation chaperone 0.55 HP15_2934 protein YeaH low > 73
Pseudomonas sp. SVBP6 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB 0.58 COO64_RS22535 YeaH/YhbH family protein low > 93
Pseudomonas sp. RS175 0.71 PFR28_03746 Chaperone protein ClpB 0.57 PFR28_04069 hypothetical protein 0.47 16
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15935 ATP-dependent chaperone ClpB 0.57 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5129 ClpB protein 0.57 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 103
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2824 ClpB protein 0.56 Pf1N1B4_2522 FIG002076: hypothetical protein low > 87
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_00971 Chaperone protein ClpB 0.57 GEMAOFIL_05287 hypothetical protein 0.62 40
Pseudomonas sp. S08-1 0.71 OH686_16420 ATP-dependent chaperone protein ClpB 0.57 OH686_15015 UPF0229 protein YeaH low > 80
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.57 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas aeruginosa PA14 0.71 IKLFDK_00820 Chaperone protein ClpB 0.59 IKLFDK_22475 UPF0229 protein PA14_07660 low > 100
Pseudomonas simiae WCS417 0.71 PS417_03830 protein disaggregation chaperone 0.56 PS417_25835 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.57 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas stutzeri RCH2 0.71 Psest_0711 ATP-dependent chaperone ClpB 0.57 Psest_3673 Uncharacterized conserved protein low > 67
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1495 ClpB protein 0.56 PfGW456L13_1195 FIG002076: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14230 ATP-dependent chaperone ClpB 0.56 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.56 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.56 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas sp. BP01 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB 0.58 JOY50_RS18115 YeaH/YhbH family protein low > 84
Pseudomonas sp. DMC3 0.70 GFF4006 Chaperone protein ClpB 0.57 GFF42 hypothetical protein low > 89
Pseudomonas putida KT2440 0.70 PP_0625 Chaperone protein ClpB 0.57 PP_0396 conserved protein of unknown function 0.21 17
Pseudomonas segetis P6 0.70 MPMX49_03920 Chaperone protein ClpB 0.57 MPMX49_00874 hypothetical protein low > 75
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB 0.52 H281DRAFT_05233 hypothetical protein low > 103
Paraburkholderia graminis OAS925 0.67 ABIE53_002033 ATP-dependent Clp protease ATP-binding subunit ClpB 0.52 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) low > 113
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB 0.51 QEN71_RS07380 YeaH/YhbH family protein low > 153
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS08990 protein disaggregation chaperone 0.51 BPHYT_RS11185 hypothetical protein low > 109
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS12455 protein disaggregation chaperone 0.52 RR42_RS36480 hypothetical protein low > 128
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB 0.52 ABZR87_RS14215 YeaH/YhbH family protein low > 80
Acidovorax sp. GW101-3H11 0.65 Ac3H11_1474 ClpB protein 0.53 Ac3H11_1146 FIG002076: hypothetical protein low > 79
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10545 protein disaggregation chaperone 0.54 HSERO_RS21695 hypothetical protein low > 78
Variovorax sp. SCN45 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) 0.52 GFF2934 FIG002076: hypothetical protein low > 127
Variovorax sp. OAS795 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB 0.51 ABID97_RS10265 YeaH/YhbH family protein low > 91
Azospirillum sp. SherDot2 0.58 MPMX19_02442 Chaperone protein ClpB 0.45 MPMX19_02156 hypothetical protein low > 112
Azospirillum brasilense Sp245 0.58 AZOBR_RS18950 ATPase AAA 0.43 AZOBR_RS12650 hypothetical protein low > 97
Rhizobium sp. OAE497 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB 0.39 ABIE40_RS12545 YeaH/YhbH family protein low > 107
Sinorhizobium meliloti 1021 0.55 SMc02433 ATP-dependent protease 0.41 SMc01266 hypothetical protein low > 103
Phaeobacter inhibens DSM 17395 0.55 PGA1_c32440 chaperone protein ClpB 0.44 PGA1_c02480 Uncharacterized conserved protein low > 62
Magnetospirillum magneticum AMB-1 0.55 AMB_RS07865 ATP-dependent chaperone ClpB 0.46 AMB_RS10890 hypothetical protein low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_14135 ATP-dependent chaperone ClpB 0.38 CA264_07095 hypothetical protein low > 74

Not shown: 46 genomes with orthologs for CSW01_03705 only; 0 genomes with orthologs for CSW01_09385 only