| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07790 | | glycerol-3-phosphate transporter permease | 1.0 | CSW01_07965 | | LysR family transcriptional regulator | 0.57 | 5 |
| Agrobacterium fabrum C58 | 0.53 | Atu0306 | | ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate) | 0.23 | Atu4021 | | LysR family transcriptional regulator | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.50 | HSERO_RS18950 | | glycerol-3-phosphate transporter permease | 0.27 | HSERO_RS17295 | | LysR family transcriptional regulator | low | > 78 |
| Azospirillum brasilense Sp245 | 0.50 | AZOBR_RS00070 | | glycerol-3-phosphate transporter permease | 0.26 | AZOBR_RS19665 | | LysR family transcripitonal regulator | low | > 97 |
| Rhizobium sp. OAE497 | 0.50 | ABIE40_RS20840 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.31 | ABIE40_RS01530 | | LysR family transcriptional regulator | low | > 107 |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS12965 | | glycerol-3-phosphate transporter permease | 0.28 | RR42_RS12375 | | LysR family transcriptional regulator | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_4787 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.22 | Ac3H11_4928 | | LysR family transcriptional regulator STM3121 | low | > 79 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_05703 | | glycerol 3-phosphate ABC transporter membrane protein /carbohydrate ABC transporter membrane protein 1, CUT1 family | 0.29 | H281DRAFT_01885 | | DNA-binding transcriptional regulator, LysR family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.48 | ABIE53_003652 | | sn-glycerol 3-phosphate transport system permease protein | 0.29 | ABIE53_004883 | | DNA-binding transcriptional LysR family regulator | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS17795 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.25 | RPSI07_RS05680 | | LysR family transcriptional regulator | 0.56 | 28 |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS11090 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | ABZR87_RS12870 | | LysR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS06340 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.24 | RS_RS23100 | | LysR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS15560 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.25 | RALBFv3_RS17920 | | LysR family transcriptional regulator | — | — |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS13020 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.25 | UW163_RS21220 | | LysR family transcriptional regulator | — | — |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS17460 | | glycerol-3-phosphate transporter permease | 0.29 | BPHYT_RS10210 | | LysR family transcriptional regulator | — | — |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_00484 | | sn-glycerol-3-phosphate transport system permease protein UgpA | 0.19 | MPMX19_03900 | | Hca operon transcriptional activator HcaR | low | > 112 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF1260 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.25 | GFF103 | | LysR family transcriptional regulator YnfL | low | > 90 |
| Variovorax sp. SCN45 | 0.46 | GFF2536 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.25 | GFF286 | | Transcriptional regulator, LysR family | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS27610 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.30 | QEN71_RS38685 | | LysR family transcriptional regulator | low | > 153 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS07225 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.20 | ABID97_RS17495 | | LysR family transcriptional regulator | — | — |
| Rhodopseudomonas palustris CGA009 | 0.45 | TX73_000295 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.20 | TX73_002855 | | LysR family transcriptional regulator | low | > 86 |
| Rahnella sp. WP5 | 0.44 | EX31_RS14755 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.36 | EX31_RS04240 | | LysR family transcriptional regulator | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS00615 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.36 | HER17_RS18045 | | LysR family transcriptional regulator | low | > 75 |
| Erwinia amylovora T8 | 0.43 | OLJFJH_04325 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.38 | OLJFJH_05375 | | transcriptional regulator | low | > 58 |
| Pantoea agglomerans CFBP13505 P0401 | 0.43 | PagCFBP13505_RS18110 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.35 | PagCFBP13505_RS12040 | | LysR family transcriptional regulator | low | > 74 |
| Pantoea sp. MT58 | 0.43 | IAI47_01595 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.34 | IAI47_21735 | | LysR family transcriptional regulator | low | > 76 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_00995 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.26 | IAI46_11680 | | LysR family transcriptional regulator | low | > 87 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_4284 | | ABC-type sugar transport systems, permease components | 0.34 | EX28DRAFT_2404 | | Transcriptional regulator | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF556 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.32 | GFF3076 | | LysR family transcriptional regulator STM3121 | low | > 78 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_04328 | | sn-glycerol-3-phosphate transport system permease protein UgpA | 0.34 | MPMX20_01221 | | HTH-type transcriptional regulator BenM | low | > 85 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS26300 | | glycerol-3-phosphate transporter permease | 0.35 | BWI76_RS16740 | | transcriptional regulator | low | > 92 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.41 | OHPLBJKB_00251 | | sn-glycerol-3-phosphate transport system permease protein UgpA | 0.23 | OHPLBJKB_02131 | | Hca operon transcriptional activator HcaR | low | > 74 |
| Escherichia coli ECRC62 | 0.41 | BNILDI_02940 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | BNILDI_17030 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 75 |
| Escherichia coli Nissle 1917 | 0.41 | ECOLIN_RS19740 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | ECOLIN_RS08910 | | LysR family transcriptional regulator | — | — |
| Escherichia coli BW25113 | 0.41 | b3452 | ugpA | glycerol-3-phosphate transporter subunit (NCBI) | 0.23 | b1595 | ynfL | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.41 | ECD_03301 | | sn-glycerol-3-phosphate ABC transporter permease | 0.23 | ECD_01564 | | LysR family putative transcriptional regulator | — | — |
| Escherichia coli ECOR27 | 0.41 | NOLOHH_08565 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | NOLOHH_18240 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 76 |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_15595 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | HEPCGN_06110 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 88 |
| Escherichia coli ECRC102 | 0.41 | NIAGMN_14545 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | NIAGMN_00340 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 80 |
| Escherichia coli ECRC101 | 0.41 | MCAODC_07305 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | MCAODC_17675 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 87 |
| Escherichia coli ECRC100 | 0.41 | OKFHMN_16775 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | OKFHMN_27735 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 79 |
| Escherichia coli ECRC98 | 0.41 | JDDGAC_20405 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | JDDGAC_02325 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | low | > 87 |
| Escherichia coli ECRC99 | 0.41 | KEDOAH_11365 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.23 | KEDOAH_00370 | ynfL | Uncharacterized HTH-type transcriptional regulator YnfL | — | — |
| Klebsiella pneumoniae MKP103 | 0.41 | KDGMDA_07175 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.34 | KDGMDA_23755 | | transcriptional regulator | low | > 95 |
| Escherichia fergusonii Becca | 0.40 | EFB2_00370 | | sn-glycerol-3-phosphate transport system permease protein UgpA | 0.23 | EFB2_02397 | | Hca operon transcriptional activator HcaR | low | > 86 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS21660 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.35 | DZA65_RS03420 | | LysR family transcriptional regulator | low | > 75 |
| Dickeya dadantii 3937 | 0.39 | DDA3937_RS00725 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.36 | DDA3937_RS03225 | | LysR family transcriptional regulator | low | > 74 |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS20645 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.35 | HGI48_RS03375 | | LysR family transcriptional regulator | low | > 71 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_4503 | | carbohydrate ABC transporter membrane protein 1, CUT1 family | 0.27 | Psyr_0421 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_4503 | | carbohydrate ABC transporter membrane protein 1, CUT1 family | 0.27 | Psyr_0421 | | transcriptional regulator, LysR family | low | > 86 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU3163 | | ABC transporter, permease protein (TIGR) | 0.26 | DVU3313 | | transcriptional regulator, LysR family (TIGR) | low | > 55 |
| Rhodanobacter denitrificans MT42 | 0.18 | LRK55_RS08415 | | sugar ABC transporter permease | 0.22 | LRK55_RS17870 | | LysR family transcriptional regulator | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.18 | LRK54_RS08650 | | sugar ABC transporter permease | 0.22 | LRK54_RS18015 | | LysR family transcriptional regulator | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.17 | OKGIIK_15410 | ugpA | sugar ABC transporter permease | 0.23 | OKGIIK_07285 | lysR | LysR family transcriptional regulator | low | > 53 |
| Desulfovibrio vulgaris Miyazaki F | 0.17 | DvMF_0657 | | binding-protein-dependent transport systems inner membrane component (RefSeq) | 0.23 | DvMF_2138 | | transcriptional regulator, LysR family (RefSeq) | low | > 51 |
| Rhodanobacter sp000427505 FW510-R12 | 0.17 | LRK53_RS02420 | | sugar ABC transporter permease | 0.23 | LRK53_RS11345 | | LysR family transcriptional regulator | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.16 | ABZR86_RS14905 | | sugar ABC transporter permease | 0.21 | ABZR86_RS05585 | | LysR substrate-binding domain-containing protein | low | > 74 |
| Pseudomonas sp. BP01 | 0.16 | JOY50_RS11420 | | carbohydrate ABC transporter permease | 0.28 | JOY50_RS09345 | | LysR family transcriptional regulator | low | > 84 |
| Pseudomonas putida KT2440 | 0.16 | PP_1016 | | mannose/glucose ABC transporter, permease protein | 0.27 | PP_5071 | | putative DNA-binding transcriptional regulator | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.15 | AO356_27675 | | sugar ABC transporter permease | 0.26 | AO356_09290 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.15 | PfGW456L13_3041 | | Various polyols ABC transporter, permease component 1 | 0.26 | PfGW456L13_255 | | LysR family transcriptional regulator YnfL | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.15 | Pf6N2E2_809 | | Various polyols ABC transporter, permease component 1 | 0.26 | Pf6N2E2_3735 | | LysR family transcriptional regulator YnfL | low | > 103 |
| Pseudomonas segetis P6 | 0.15 | ACVTMO_RS14050 | | carbohydrate ABC transporter permease | 0.19 | ACVTMO_RS04005 | | LysR family transcriptional regulator | 0.47 | 67 |
| Pseudomonas sp. RS175 | 0.15 | PFR28_01712 | | sn-glycerol-3-phosphate transport system permease protein UgpA | 0.27 | PFR28_05019 | | HTH-type transcriptional regulator BenM | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.15 | GEMAOFIL_02790 | | Lactose transport system permease protein LacF | 0.26 | GEMAOFIL_00636 | | HTH-type transcriptional regulator BenM | — | — |
| Pseudomonas simiae WCS417 | 0.15 | PS417_12710 | | ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) | 0.27 | PS417_02020 | | LysR family transcriptional regulator | 0.18 | 56 |
| Pseudomonas fluorescens SBW25 | 0.15 | PFLU_RS13400 | | sugar ABC transporter permease | 0.26 | PFLU_RS02065 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.15 | Pf1N1B4_4849 | | Various polyols ABC transporter, permease component 1 | 0.25 | Pf1N1B4_1530 | | LysR family transcriptional regulator YnfL | 0.32 | 51 |
| Pseudomonas fluorescens SBW25-INTG | 0.15 | PFLU_RS13400 | | sugar ABC transporter permease | 0.26 | PFLU_RS02065 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.15 | AO353_25885 | | sugar ABC transporter permease | 0.25 | AO353_12600 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas orientalis W4I3 | 0.15 | QF045_RS17185 | | sugar ABC transporter permease | 0.27 | QF045_RS05080 | | LysR substrate-binding domain-containing protein | low | > 93 |
| Pseudomonas sp. DMC3 | 0.15 | GFF2896 | | sn-glycerol-3-phosphate transport system permease protein UgpA | 0.25 | GFF3108 | | HTH-type transcriptional regulator BenM | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.15 | Psest_1897 | | ABC-type sugar transport systems, permease components | 0.28 | Psest_3707 | | Transcriptional regulator | low | > 67 |
| Pseudomonas aeruginosa MRSN321 | 0.14 | DY961_RS18090 | | sugar ABC transporter permease | 0.28 | DY961_RS10965 | | LysR family transcriptional regulator | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.14 | DQ20_RS59325 | | sugar ABC transporter permease | 0.28 | DQ20_RS51110 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.14 | IKLFDK_11455 | | sugar ABC transporter permease | 0.28 | IKLFDK_28390 | | LysR family transcriptional regulator | low | > 98 |
| Pseudomonas sp. SVBP6 | 0.14 | COO64_RS04560 | | carbohydrate ABC transporter permease | 0.27 | COO64_RS13110 | | LysR family transcriptional regulator | low | > 93 |
Not shown: 13 genomes with orthologs for CSW01_07790 only; 12 genomes with orthologs for CSW01_07965 only