Conservation of cofitness between CSW01_02215 and CSW01_06735 in Vibrio cholerae E7946 ATCC 55056

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02215 carbon-nitrogen hydrolase family protein 1.0 CSW01_06735 methylisocitrate lyase 0.68 11
Pseudomonas sp. S08-1 0.45 OH686_08585 Uncharacterized subgroup of the nitrilase superfamily 0.56 OH686_01690 methylisocitrate lyase low > 80
Shewanella oneidensis MR-1 0.44 SO4092 hydrolase, carbon-nitrogen family (NCBI ptt file) 0.63 SO0345 prpB methylisocitrate lyase (NCBI ptt file) low > 76
Pseudomonas aeruginosa PA14 0.43 IKLFDK_01705 carbon-nitrogen hydrolase 0.65 IKLFDK_03445 methylisocitrate lyase low > 98
Pseudomonas aeruginosa MRSN321 0.43 DY961_RS24100 carbon-nitrogen hydrolase family protein 0.65 DY961_RS08515 prpB;go_function=methylisocitrate methylisocitrate lyase low > 100
Pseudomonas aeruginosa PUPa3 0.43 DQ20_RS56560 carbon-nitrogen hydrolase family protein 0.65 DQ20_RS44335 prpB;go_function=methylisocitrate methylisocitrate lyase low > 101
Shewanella loihica PV-4 0.43 Shew_0409 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.67 Shew_1820 prpB 2-methylisocitrate lyase (RefSeq) low > 60
Pseudomonas segetis P6 0.42 MPMX49_03866 Deaminated glutathione amidase 0.62 MPMX49_02628 2-methylisocitrate lyase low > 75
Shewanella sp. ANA-3 0.42 Shewana3_3642 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.63 Shewana3_3825 prpB 2-methylisocitrate lyase (RefSeq) low > 73
Pseudomonas sp. SVBP6 0.42 COO64_RS04220 carbon-nitrogen hydrolase family protein 0.63 COO64_RS09900 prpB methylisocitrate lyase low > 93
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_5027 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.63 PfGW456L13_4118 Methylisocitrate lyase (EC 4.1.3.30) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.62 Psyr_2085 methylisocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.62 Psyr_2085 methylisocitrate lyase low > 86
Pseudomonas simiae WCS417 0.42 PS417_04280 carbon-nitrogen hydrolase 0.63 PS417_21080 2-methylisocitrate lyase — —
Pseudomonas sp. RS175 0.42 PFR28_00160 Deaminated glutathione amidase 0.64 PFR28_02928 2-methylisocitrate lyase low > 88
Pseudomonas sp. DMC3 0.42 GFF1815 Deaminated glutathione amidase 0.63 GFF5230 2-methylisocitrate lyase low > 89
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.62 PFLU_RS22690 methylisocitrate lyase low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.62 PFLU_RS22690 methylisocitrate lyase low > 109
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_05220 carbon-nitrogen hydrolase 0.64 AO353_00900 2-methylisocitrate lyase low > 101
Pseudomonas stutzeri RCH2 0.41 Psest_3321 Predicted amidohydrolase 0.63 Psest_2321 methylisocitrate lyase low > 67
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07100 carbon-nitrogen hydrolase 0.64 AO356_20865 2-methylisocitrate lyase low > 104
Shewanella amazonensis SB2B 0.41 Sama_0473 carbon-nitrogen family hydrolase (RefSeq) 0.61 Sama_3294 prpB 2-methylisocitrate lyase (RefSeq) low > 62
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_01061 Deaminated glutathione amidase 0.62 GEMAOFIL_04361 2-methylisocitrate lyase low > 96
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3281 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.63 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) low > 103
Pseudomonas putida KT2440 0.41 PP_0939 Carbon-nitrogen hydrolase family protein 0.63 PP_2334 2-methylisocitrate lyase low > 96
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1093 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.63 Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30) low > 87
Azospirillum brasilense Sp245 0.40 AZOBR_RS02920 amidohydrolase 0.27 AZOBR_RS27785 carboxyvinyl-carboxyphosphonate phosphorylmutase low > 97
Pseudomonas orientalis W4I3 0.40 QF045_RS07270 carbon-nitrogen hydrolase family protein 0.63 QF045_RS22905 methylisocitrate lyase low > 93
Pseudomonas sp. BP01 0.40 JOY50_RS11065 carbon-nitrogen hydrolase family protein 0.63 JOY50_RS25750 prpB methylisocitrate lyase low > 84
Azospirillum sp. SherDot2 0.40 MPMX19_02429 Deaminated glutathione amidase 0.31 MPMX19_04657 2,3-dimethylmalate lyase low > 112
Alteromonas macleodii MIT1002 0.38 MIT1002_00226 (R)-stereoselective amidase 0.67 MIT1002_03129 Methylisocitrate lyase low > 70
Marinobacter adhaerens HP15 0.38 HP15_2449 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.68 HP15_1932 methylisocitrate lyase 2 — —
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS26550 carbon-nitrogen hydrolase family protein 0.62 QEN71_RS17555 methylisocitrate lyase low > 153
Dinoroseobacter shibae DFL-12 0.38 Dshi_3506 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.29 Dshi_0689 isocitrate lyase family protein (RefSeq) low > 64
Methylophilus sp. DMC18 0.37 GFF381 Deaminated glutathione amidase 0.62 GFF469 2-methylisocitrate lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_04689 nitrilase 0.30 H281DRAFT_06209 carboxyvinyl-carboxyphosphonate phosphorylmutase low > 103
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS07150 apolipoprotein acyltransferase 0.63 HSERO_RS15660 2-methylisocitrate lyase — —
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS05880 acyltransferase 0.62 RR42_RS11260 Methylisocitrate lyase (EC 4.1.3.30) (from data) low > 128
Rhodopseudomonas palustris CGA009 0.36 TX73_003100 carbon-nitrogen hydrolase family protein 0.33 TX73_012370 methylisocitrate lyase low > 86
Ralstonia solanacearum GMI1000 0.36 RS_RS13310 carbon-nitrogen hydrolase family protein 0.62 RS_RS10050 methylisocitrate lyase low > 80
Ralstonia solanacearum PSI07 0.35 RPSI07_RS11855 carbon-nitrogen hydrolase family protein 0.62 RPSI07_RS14645 methylisocitrate lyase low > 81
Ralstonia solanacearum UW163 0.35 UW163_RS08175 carbon-nitrogen hydrolase family protein 0.63 UW163_RS11055 methylisocitrate lyase — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS05450 carbon-nitrogen hydrolase family protein 0.63 RALBFv3_RS02670 methylisocitrate lyase low > 76
Acinetobacter baumannii LAC-4 0.35 RR41_RS15875 carbon-nitrogen hydrolase family protein 0.60 RR41_RS18485 methylisocitrate lyase low > 55
Variovorax sp. OAS795 0.35 ABID97_RS02000 carbon-nitrogen hydrolase family protein 0.32 ABID97_RS18835 oxaloacetate decarboxylase low > 91
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS01100 carbon-nitrogen hydrolase family protein 0.62 ABZR87_RS14590 methylisocitrate lyase low > 80
Rhodospirillum rubrum S1H 0.34 Rru_A0739 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) 0.34 Rru_A2320 Ankyrin (NCBI) low > 58
Xanthobacter sp. DMC5 0.33 GFF102 Deaminated glutathione amidase 0.32 GFF2763 2,3-dimethylmalate lyase — —
Acinetobacter radioresistens SK82 0.33 MPMX26_00580 Deaminated glutathione amidase 0.60 MPMX26_01289 2-methylisocitrate lyase — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS02585 carbon-nitrogen hydrolase family protein 0.58 ABCV34_RS01670 methylisocitrate lyase low > 48
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_2071 Predicted amidohydrolase 0.64 B158DRAFT_1343 methylisocitrate lyase low > 40
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF2535 FIG003879: Predicted amidohydrolase 0.30 GFF3032 Methylisocitrate lyase (EC 4.1.3.30) — —
Dickeya dianthicola 67-19 0.19 HGI48_RS19475 deaminated glutathione amidase 0.14 HGI48_RS06990 phosphoenolpyruvate mutase low > 71
Dickeya dianthicola ME23 0.18 DZA65_RS06520 deaminated glutathione amidase 0.14 DZA65_RS07470 phosphoenolpyruvate mutase low > 75
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.2374.1 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) 0.58 Xcc-8004.3981.1 Methylisocitrate lyase (EC 4.1.3.30) — —
Rhodanobacter sp000427505 FW510-R12 0.15 LRK53_RS09305 amidohydrolase 0.60 LRK53_RS09460 methylisocitrate lyase low > 59
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS00825 amidohydrolase 0.58 LRK54_RS00695 methylisocitrate lyase low > 59
Rhodanobacter denitrificans MT42 0.14 LRK55_RS00600 amidohydrolase 0.58 LRK55_RS00470 methylisocitrate lyase low > 63
Lysobacter sp. OAE881 0.14 ABIE51_RS09320 carbon-nitrogen hydrolase 0.57 ABIE51_RS06015 methylisocitrate lyase — —
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_06395 nit2 amidohydrolase 0.59 OKGIIK_06565 prpB methylisocitrate lyase low > 53
Bosea sp. OAE506 0.14 ABIE41_RS12325 N-carbamoyl-D-amino-acid hydrolase 0.29 ABIE41_RS16605 isocitrate lyase/PEP mutase family protein low > 77
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS02765 carbon-nitrogen hydrolase 0.56 ABZR86_RS08480 methylisocitrate lyase — —

Not shown: 41 genomes with orthologs for CSW01_02215 only; 14 genomes with orthologs for CSW01_06735 only