Conservation of cofitness between CSW01_00235 and CSW01_05380 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00235 peptide deformylase 1.0 CSW01_05380 YkgJ family cysteine cluster protein 0.58 11
Serratia liquefaciens MT49 0.77 IAI46_23265 peptide deformylase 0.56 IAI46_17265 YkgJ family cysteine cluster protein — —
Rahnella sp. WP5 0.76 EX31_RS15975 peptide deformylase 0.58 EX31_RS19085 YkgJ family cysteine cluster protein low > 89
Erwinia amylovora T8 0.75 OLJFJH_03710 peptide deformylase 0.52 OLJFJH_11765 Putative zinc- or iron-chelating domain-containing protein — —
Klebsiella michiganensis M5al 0.75 BWI76_RS25670 peptide deformylase 0.58 BWI76_RS19745 zinc/iron-chelating domain-containing protein — —
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS22535 peptide deformylase 0.57 PagCFBP13505_RS00730 hypothetical protein — —
Pantoea sp. MT58 0.74 IAI47_02290 peptide deformylase 0.53 IAI47_06645 YkgJ family cysteine cluster protein — —
Escherichia coli ECRC98 0.73 JDDGAC_21160 def peptide deformylase 0.59 JDDGAC_27385 yeiW UPF0153 protein YeiW — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00417 Peptide deformylase 0.59 OHPLBJKB_01539 hypothetical protein — —
Escherichia coli ECRC99 0.73 KEDOAH_10610 def peptide deformylase 0.59 KEDOAH_04760 yeiW UPF0153 protein YeiW — —
Escherichia coli BW25113 0.73 b3287 def peptide deformylase (NCBI) 0.59 b4502 yeiW hypothetical protein (NCBI) — —
Escherichia coli ECRC102 0.73 NIAGMN_15300 def peptide deformylase 0.59 NIAGMN_21190 yeiW UPF0153 protein YeiW — —
Dickeya dadantii 3937 0.73 DDA3937_RS19125 peptide deformylase 0.54 DDA3937_RS22190 YkgJ family cysteine cluster protein — —
Escherichia coli ECRC100 0.73 OKFHMN_17530 def peptide deformylase 0.59 OKFHMN_23425 yeiW UPF0153 protein YeiW — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS18865 peptide deformylase 0.59 ECOLIN_RS12695 YkgJ family cysteine cluster protein — —
Escherichia fergusonii Becca 0.73 EFB2_00537 Peptide deformylase 0.59 EFB2_01686 hypothetical protein — —
Escherichia coli ECRC101 0.73 MCAODC_08060 def peptide deformylase 0.59 MCAODC_14475 yeiW UPF0153 protein YeiW — —
Escherichia coli ECRC62 0.73 BNILDI_02190 def peptide deformylase 0.59 BNILDI_13920 yeiW UPF0153 protein YeiW — —
Escherichia coli BL21 0.73 ECD_03137 peptide deformylase 0.59 ECD_02100 UPF0153 cysteine cluster protein — —
Escherichia coli ECOR27 0.73 NOLOHH_09330 def peptide deformylase 0.59 NOLOHH_15000 yeiW UPF0153 protein YeiW — —
Escherichia coli ECOR38 0.73 HEPCGN_16360 def peptide deformylase 0.59 HEPCGN_22690 yeiW UPF0153 protein YeiW — —
Dickeya dianthicola ME23 0.73 DZA65_RS20340 peptide deformylase 0.46 DZA65_RS09555 proteinase inhibitor — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS02225 peptide deformylase 0.45 HER17_RS12875 hypothetical protein low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS19215 peptide deformylase 0.46 HGI48_RS09250 YkgJ family cysteine cluster protein — —
Enterobacter sp. TBS_079 0.72 MPMX20_04194 Peptide deformylase 0.64 MPMX20_03135 hypothetical protein low > 85
Shewanella amazonensis SB2B 0.65 Sama_0043 def peptide deformylase (RefSeq) 0.71 Sama_0055 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.63 Shewana3_0035 def peptide deformylase (RefSeq) 0.68 Shewana3_0046 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.63 Shew_3736 peptide deformylase (RefSeq) 0.71 Shew_3811 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.62 SO0032 def-1 polypeptide deformylase (NCBI ptt file) 0.68 SO0044 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_0019 peptide deformylase 0.61 Psyr_2002 Protein of unknown function UPF0153 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_0019 peptide deformylase 0.61 Psyr_2002 Protein of unknown function UPF0153 — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_11285 peptide deformylase 0.64 AO356_20355 hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4123 Peptide deformylase (EC 3.5.1.88) 0.64 Pf6N2E2_5991 proteinase inhibitor — —
Pseudomonas sp. DMC3 0.59 GFF592 Peptide deformylase 0.66 GFF4711 hypothetical protein — —
Pseudomonas stutzeri RCH2 0.59 Psest_0023 peptide deformylase 0.59 Psest_2500 hypothetical protein — —
Pseudomonas sp. RS175 0.58 PFR28_04661 Peptide deformylase 0.64 PFR28_02971 hypothetical protein — —
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_1912 Peptide deformylase (EC 3.5.1.88) 0.65 Pf1N1B4_384 proteinase inhibitor — —
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_10640 peptide deformylase 0.64 AO353_01200 hypothetical protein — —
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.4743.1 Peptide deformylase (EC 3.5.1.88) 0.59 Xcc-8004.453.1 Proteinase inhibitor — —
Pseudomonas segetis P6 0.57 ACVTMO_RS01355 def peptide deformylase 0.53 ACVTMO_RS11635 YkgJ family cysteine cluster protein — —
Pseudomonas sp. SVBP6 0.57 COO64_RS02225 def peptide deformylase 0.62 COO64_RS18860 YkgJ family cysteine cluster protein — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS00155 peptide deformylase 0.59 QEN71_RS03205 YkgJ family cysteine cluster protein — —
Pseudomonas sp. S08-1 0.56 OH686_12515 peptide deformylase 0.59 OH686_02005 UPF0153 protein YeiW — —
Pseudomonas aeruginosa PA14 0.56 IKLFDK_25465 Peptide deformylase 0.68 IKLFDK_07555 UPF0153 protein PA1578-1 — —
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS58700 def;go_function=peptide peptide deformylase 0.68 DQ20_RS53655 YkgJ family cysteine cluster protein — —
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS26295 def;go_function=peptide peptide deformylase 0.68 DY961_RS19540 YkgJ family cysteine cluster protein — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS00090 peptide deformylase 0.61 PFLU_RS22885 YkgJ family cysteine cluster protein — —
Pseudomonas putida KT2440 0.55 PP_0068 peptide deformylase 0.59 PP_4195 putative oxidoreductase — —
Pseudomonas orientalis W4I3 0.55 QF045_RS03030 peptide deformylase 0.60 QF045_RS23350 YkgJ family cysteine cluster protein — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS00090 peptide deformylase 0.61 PFLU_RS22885 YkgJ family cysteine cluster protein low > 109
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_00225 Peptide deformylase 0.64 GEMAOFIL_04395 hypothetical protein — —
Pseudomonas simiae WCS417 0.55 PS417_00095 peptide deformylase 0.61 PS417_21265 hypothetical protein — —
Pseudomonas sp. BP01 0.55 JOY50_RS08240 def peptide deformylase 0.59 JOY50_RS19040 YkgJ family cysteine cluster protein — —
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS13880 peptide deformylase 0.62 ABZR86_RS14980 YkgJ family cysteine cluster protein low > 74
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS04975 peptide deformylase 0.64 ABZR87_RS08785 YkgJ family cysteine cluster protein low > 80
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS20470 peptide deformylase 0.57 RR42_RS15640 hypothetical protein — —
Ralstonia solanacearum UW163 0.53 UW163_RS03815 peptide deformylase 0.64 UW163_RS00830 YkgJ family cysteine cluster protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF2573 Peptide deformylase (EC 3.5.1.88) 0.52 GFF2023 Proteinase inhibitor — —
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS09765 peptide deformylase 0.64 RALBFv3_RS12735 YkgJ family cysteine cluster protein — —
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS01455 peptide deformylase 0.58 BPHYT_RS15485 proteinase inhibitor low > 109
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS23405 peptide deformylase 0.56 HSERO_RS02445 proteinase inhibitor — —
Ralstonia solanacearum PSI07 0.53 RPSI07_RS23600 peptide deformylase 0.64 RPSI07_RS20525 YkgJ family cysteine cluster protein — —
Dechlorosoma suillum PS 0.53 Dsui_0817 peptide deformylase 0.68 Dsui_0425 putative Fe-S oxidoreductase — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10135 peptide deformylase 0.66 LRK54_RS08600 YkgJ family cysteine cluster protein — —
Rhodanobacter denitrificans MT42 0.52 LRK55_RS09775 peptide deformylase 0.66 LRK55_RS08365 YkgJ family cysteine cluster protein — —
Ralstonia solanacearum GMI1000 0.52 RS_RS00350 peptide deformylase 0.64 RS_RS03515 YkgJ family cysteine cluster protein — —
Acidovorax sp. GW101-3H11 0.49 Ac3H11_4409 Peptide deformylase (EC 3.5.1.88) 0.64 Ac3H11_4962 Proteinase inhibitor — —

Not shown: 51 genomes with orthologs for CSW01_00235 only; 0 genomes with orthologs for CSW01_05380 only