| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06840 | | amino acid ABC transporter ATP-binding protein | 1.0 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.73 | 5 |
| Azospirillum sp. SherDot2 | 0.80 | MPMX19_01335 | | Glutamine transport ATP-binding protein GlnQ | 0.33 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Rhizobium sp. OAE497 | 0.80 | ABIE40_RS08800 | | amino acid ABC transporter ATP-binding protein | 0.36 | ABIE40_RS14790 | | RluA family pseudouridine synthase | low | > 107 |
| Pseudomonas syringae pv. syringae B728a | 0.79 | Psyr_1075 | | amino acid ABC transporter ATP-binding protein, PAAT family | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.79 | AO356_17395 | | glutamine ABC transporter ATP-binding protein | 0.55 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.79 | Pf6N2E2_5405 | | ABC transporter for D-Alanine, ATPase component (from data) | 0.54 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.79 | Psyr_1075 | | amino acid ABC transporter ATP-binding protein, PAAT family | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas sp. RS175 | 0.79 | PFR28_03539 | | Glutamine transport ATP-binding protein GlnQ | 0.54 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Agrobacterium fabrum C58 | 0.79 | Atu1580 | | ABC transporter, nucleotide binding/ATPase protein (amino acid) | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Pseudomonas sp. S08-1 | 0.79 | OH686_17820 | | Amino acid ABC transporter, ATP-binding protein YhdZ | 0.53 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Rhodospirillum rubrum S1H | 0.79 | Rru_A1001 | | ABC transporter component (NCBI) | 0.35 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Pseudomonas simiae WCS417 | 0.79 | PS417_04915 | | glutamine ABC transporter ATP-binding protein | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas sp. DMC3 | 0.79 | GFF1937 | | Glutamine transport ATP-binding protein GlnQ | 0.54 | GFF4004 | | Ribosomal large subunit pseudouridine synthase D | low | > 89 |
| Pseudomonas protegens RBAN4 | 0.79 | FABNJH_05440 | ehuA | ABC-type polar amino acid transport system, ATPase component | 0.55 | FABNJH_26810 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pseudomonas fluorescens SBW25 | 0.79 | PFLU_RS04975 | | amino acid ABC transporter ATP-binding protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.79 | Pf1N1B4_914 | | ABC-type polar amino acid transport system, ATPase component | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas lactucae CFBP13502 | 0.79 | GEMAOFIL_01187 | | Glutamine transport ATP-binding protein GlnQ | 0.54 | GEMAOFIL_00969 | | Ribosomal large subunit pseudouridine synthase D | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.79 | AO353_04600 | | glutamine ABC transporter ATP-binding protein | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.79 | PFLU_RS04975 | | amino acid ABC transporter ATP-binding protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Sinorhizobium meliloti 1021 | 0.78 | SMc02121 | | ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) | 0.33 | SMc00647 | | ribosomal large subunit pseudouridine synthase | low | > 103 |
| Pseudomonas segetis P6 | 0.78 | ACVTMO_RS17545 | | amino acid ABC transporter ATP-binding protein | 0.53 | ACVTMO_RS19440 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Pseudomonas sp. BP01 | 0.78 | JOY50_RS15290 | | amino acid ABC transporter ATP-binding protein | 0.54 | JOY50_RS27130 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 84 |
| Pseudomonas putida KT2440 | 0.78 | PP_1300 | | putative amino acid ABC transporter - ATP-binding subunit | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_1701 | | ABC-type polar amino acid transport system, ATPase component | 0.54 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas sp. SVBP6 | 0.78 | COO64_RS11710 | | amino acid ABC transporter ATP-binding protein | 0.54 | COO64_RS11055 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 91 |
| Bosea sp. OAE506 | 0.78 | ABIE41_RS16010 | | amino acid ABC transporter ATP-binding protein | 0.32 | ABIE41_RS05635 | | RluA family pseudouridine synthase | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.78 | Dshi_0321 | | ABC transporter related (RefSeq) | 0.28 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Xanthobacter sp. DMC5 | 0.77 | GFF1022 | | Glutamine transport ATP-binding protein GlnQ | 0.36 | GFF2508 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Phaeobacter inhibens DSM 17395 | 0.77 | PGA1_c02010 | | glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Rahnella sp. WP5 | 0.77 | EX31_RS12140 | | amino acid ABC transporter ATP-binding protein | 0.69 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 89 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_3324 | | ABC-type polar amino acid transport system, ATPase component | 0.70 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.63 | 18 |
| Enterobacter sp. TBS_079 | 0.76 | MPMX20_04180 | | Glutamine transport ATP-binding protein GlnQ | 0.70 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | low | > 85 |
| Escherichia coli Nissle 1917 | 0.76 | ECOLIN_RS18790 | | amino acid ABC transporter ATP-binding protein | 0.70 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Escherichia fergusonii Becca | 0.76 | EFB2_00552 | | Glutamine transport ATP-binding protein GlnQ | 0.70 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Erwinia tracheiphila HP pepo 2.2 | 0.76 | IJEDHG_13180 | glnQ | ABC transporter ATP-binding protein | 0.68 | IJEDHG_26870 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 61 |
| Dickeya dadantii 3937 | 0.76 | DDA3937_RS01255 | | amino acid ABC transporter ATP-binding protein | 0.70 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Escherichia coli ECRC102 | 0.76 | NIAGMN_15380 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.70 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 80 |
| Escherichia coli ECRC62 | 0.76 | BNILDI_02110 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.71 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli ECRC99 | 0.76 | KEDOAH_10530 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.70 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Erwinia amylovora T8 | 0.76 | OLJFJH_06820 | | ABC-type polar amino acid transport system ATPase component | 0.70 | OLJFJH_09725 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 58 |
| Escherichia coli ECRC98 | 0.76 | JDDGAC_21240 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.70 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli ECRC101 | 0.76 | MCAODC_08140 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.70 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli ECOR38 | 0.76 | HEPCGN_16440 | | ABC transporter ATP-binding protein | 0.70 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 88 |
| Marinobacter adhaerens HP15 | 0.76 | HP15_2193 | | amino-acid ABC transporter ATP-binding protein-like protein | 0.51 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Escherichia coli ECRC100 | 0.76 | OKFHMN_17620 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.70 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 79 |
| Escherichia coli BW25113 | 0.75 | b3271 | yhdZ | predicted amino-acid transporter subunit (NCBI) | 0.70 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Escherichia coli BL21 | 0.75 | ECD_03129 | | putative amino acid ABC transporter ATPase | 0.70 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | low | > 61 |
| Escherichia coli ECOR27 | 0.75 | NOLOHH_09410 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | 0.71 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.75 | OHPLBJKB_00432 | | Glutamine transport ATP-binding protein GlnQ | 0.70 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.75 | LU632_RS19785 | | amino acid ABC transporter ATP-binding protein | 0.68 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 73 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS01285 | | amino acid ABC transporter ATP-binding protein | 0.70 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS01240 | | amino acid ABC transporter ATP-binding protein | 0.70 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 71 |
| Variovorax sp. SCN45 | 0.74 | GFF4213 | | ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.74 | PagCFBP13516_RS02375 | | amino acid ABC transporter ATP-binding protein | 0.70 | PagCFBP13516_RS04800 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 80 |
| Pantoea sp. MT58 | 0.74 | IAI47_02360 | | amino acid ABC transporter ATP-binding protein | 0.70 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.74 | HER17_RS20305 | | amino acid ABC transporter ATP-binding protein | 0.71 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Variovorax sp. OAS795 | 0.73 | ABID97_RS13305 | | amino acid ABC transporter ATP-binding protein | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.73 | TX73_013255 | | amino acid ABC transporter ATP-binding protein | 0.33 | TX73_001905 | | RluA family pseudouridine synthase | 0.34 | 52 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.69 | GFF1640 | | amino acid ABC transporter, ATP-binding protein | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Castellaniella sp019104865 MT123 | 0.67 | ABCV34_RS08630 | | amino acid ABC transporter ATP-binding protein | 0.33 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.43 | 1 |
| Synechococcus elongatus PCC 7942 | 0.62 | Synpcc7942_0249 | bgtA | ATPase | 0.29 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | low | > 38 |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS11345 | | amino acid ABC transporter ATP-binding protein | 0.39 | RS_RS08205 | | RluA family pseudouridine synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.60 | ABZR87_RS15830 | | amino acid ABC transporter ATP-binding protein | 0.38 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.60 | UW163_RS09770 | | amino acid ABC transporter ATP-binding protein | 0.38 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS13330 | | amino acid ABC transporter ATP-binding protein | 0.39 | RPSI07_RS15970 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas orientalis W4I3 | 0.59 | QF045_RS08470 | | amino acid ABC transporter ATP-binding protein | 0.54 | QF045_RS06805 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS03900 | | amino acid ABC transporter ATP-binding protein | 0.38 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Pseudomonas aeruginosa PUPa3 | 0.58 | NPBIFN_03698 | | Amino acid ABC transporter ATP binding protein | 0.51 | NPBIFN_04812 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.58 | IKLFDK_06370 | | amino acid ABC transporter ATP-binding protein | 0.51 | IKLFDK_00810 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.58 | PFGADD_03658 | | Amino acid ABC transporter ATP binding protein | 0.51 | PFGADD_04751 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_00675 | | Glutamine transport ATP-binding protein GlnQ | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Serratia liquefaciens MT49 | 0.57 | IAI46_05980 | | amino acid ABC transporter ATP-binding protein | 0.70 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Herbaspirillum seropedicae SmR1 | 0.57 | HSERO_RS17555 | | arginine ABC transporter ATP-binding protein | 0.35 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Methanococcus maripaludis JJ | 0.57 | MMJJ_RS04120 | | amino acid ABC transporter ATP-binding protein | 0.25 | MMJJ_RS09155 | | RluA family pseudouridine synthase | low | > 28 |
| Klebsiella pneumoniae MRSN742743 | 0.56 | GJGHJB_03571 | glnQ | ABC transporter | 0.70 | GJGHJB_01188 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 83 |
| Klebsiella pneumoniae MKP103 | 0.56 | KDGMDA_16450 | | arginine transporter ATP-binding subunit | 0.70 | KDGMDA_02140 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 94 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.56 | GFF4570 | | Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) | 0.70 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 78 |
| Klebsiella michiganensis M5al | 0.56 | BWI76_RS08095 | | arginine ABC transporter ATP-binding protein | 0.69 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | low | > 92 |
| Fusobacterium nucleatum SB010 | 0.55 | HUW76_06925 | | amino acid ABC transporter ATP-binding protein | 0.29 | HUW76_08575 | | RluA family pseudouridine synthase | low | > 35 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_0880 | | ABC transporter related (RefSeq) | 0.60 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Acinetobacter baumannii LAC-4 | 0.54 | RR41_RS11670 | | amino acid ABC transporter ATP-binding protein | 0.49 | RR41_RS15070 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Shewanella loihica PV-4 | 0.54 | Shew_3164 | | ABC transporter-related protein (RefSeq) | 0.60 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Synechocystis sp000284455 PCC 6803 | 0.50 | SGL_RS08035 | | amino acid ABC transporter ATP-binding protein | 0.31 | SGL_RS11530 | | RluA family pseudouridine synthase | low | > 52 |
Not shown: 11 genomes with orthologs for CSW01_06840 only; 29 genomes with orthologs for CSW01_03695 only