Conservation of cofitness between CSW01_09385 and CSW01_01985 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09385 hypothetical protein 1.0 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.39 18
Klebsiella pneumoniae MKP103 0.76 KDGMDA_19155 UPF0229 protein KPK_3252 0.73 KDGMDA_10355 tRNA dihydrouridine(20/20a) synthase DusA low > 95
Serratia liquefaciens MT49 0.75 IAI46_14380 YeaH/YhbH family protein 0.77 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01948 hypothetical protein 0.75 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase low > 74
Klebsiella michiganensis M5al 0.75 BWI76_RS11480 hypothetical protein 0.75 BWI76_RS01900 tRNA-dihydrouridine synthase A low > 92
Escherichia coli ECRC100 0.75 OKFHMN_26705 yeaH UPF0229 protein YeaH 0.75 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 79
Escherichia coli BW25113 0.75 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.75 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) low > 76
Escherichia coli ECRC62 0.75 BNILDI_16020 yeaH UPF0229 protein YeaH 0.75 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 75
Escherichia coli ECRC102 0.75 NIAGMN_01360 yeaH UPF0229 protein YeaH 0.75 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 80
Escherichia coli ECRC98 0.75 JDDGAC_01280 yeaH UPF0229 protein YeaH 0.75 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Escherichia coli ECRC101 0.75 MCAODC_18705 yeaH UPF0229 protein YeaH 0.75 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 88
Escherichia coli BL21 0.75 ECD_01753 UPF0229 family protein 0.75 ECD_03921 tRNA-dihydrouridine synthase A — —
Escherichia coli ECOR27 0.75 NOLOHH_17235 yeaH UPF0229 protein YeaH 0.75 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia coli ECRC99 0.75 KEDOAH_01405 yeaH UPF0229 protein YeaH 0.75 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09945 YeaH/YhbH family protein 0.75 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA low > 55
Escherichia fergusonii Becca 0.75 EFB2_02210 hypothetical protein 0.75 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase low > 86
Escherichia coli ECOR38 0.75 HEPCGN_05095 yeaH UPF0229 protein YeaH 0.75 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 88
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1777 Uncharacterized conserved protein 0.75 EX28DRAFT_4263 tRNA dihydrouridine synthase A low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_01839 hypothetical protein 0.75 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3472 UPF0229 protein YeaH 0.75 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) low > 78
Pectobacterium carotovorum WPP14 0.73 HER17_RS11155 YeaH/YhbH family protein 0.75 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Pantoea sp. MT58 0.73 IAI47_08920 YeaH/YhbH family protein 0.76 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA low > 76
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS02755 YeaH/YhbH family protein 0.75 PagCFBP13505_RS21190 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Rahnella sp. WP5 0.73 EX31_RS06255 YeaH/YhbH family protein 0.76 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA low > 89
Erwinia amylovora T8 0.72 OLJFJH_13195 UPF0229 protein ETA_15540 0.76 OLJFJH_03475 tRNA dihydrouridine(20/20a) synthase DusA low > 58
Dickeya dianthicola 67-19 0.72 HGI48_RS10250 YeaH/YhbH family protein 0.74 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA low > 71
Dickeya dadantii 3937 0.71 DDA3937_RS10240 YeaH/YhbH family protein 0.75 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Dickeya dianthicola ME23 0.71 DZA65_RS10725 YeaH/YhbH family protein 0.75 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_22595 yeaH UPF0229 protein ETA_15540 0.70 IJEDHG_11085 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.85 41
Erwinia tracheiphila SCR3 0.71 LU632_RS13015 YeaH/YhbH family protein 0.69 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 74
Alteromonas macleodii MIT1002 0.69 MIT1002_01232 hypothetical protein 0.58 MIT1002_03387 putative tRNA-dihydrouridine synthase low > 70
Shewanella oneidensis MR-1 0.68 SO2883 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.72 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.66 Shew_1832 hypothetical protein (RefSeq) 0.72 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) low > 60
Shewanella amazonensis SB2B 0.66 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) 0.71 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) low > 62
Shewanella sp. ANA-3 0.65 Shewana3_1637 hypothetical protein (RefSeq) 0.73 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.38 64
Pseudomonas aeruginosa PA14 0.59 IKLFDK_22475 UPF0229 protein PA14_07660 0.55 IKLFDK_14145 tRNA dihydrouridine(20/20a) synthase DusA low > 100
Pseudomonas sp. BP01 0.58 JOY50_RS18115 YeaH/YhbH family protein 0.56 JOY50_RS25205 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 84
Pseudomonas sp. SVBP6 0.58 COO64_RS22535 YeaH/YhbH family protein 0.54 COO64_RS09565 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 93
Pseudomonas putida KT2440 0.57 PP_0396 conserved protein of unknown function 0.58 PP_2169 tRNA-dihydrouridine synthase A low > 96
Pseudomonas segetis P6 0.57 MPMX49_00874 hypothetical protein 0.53 MPMX49_01913 tRNA-dihydrouridine(20/20a) synthase low > 75
Pseudomonas sp. S08-1 0.57 OH686_15015 UPF0229 protein YeaH 0.56 OH686_22745 tRNA-dihydrouridine(20/20a) synthase low > 80
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) 0.54 Pf6N2E2_2257 tRNA dihydrouridine synthase A low > 103
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) 0.54 AO356_02170 tRNA-dihydrouridine synthase A low > 104
Pseudomonas fluorescens SBW25 0.57 PFLU_RS27490 YeaH/YhbH family protein 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA low > 109
Pseudomonas lactucae CFBP13502 0.57 GEMAOFIL_05287 hypothetical protein 0.54 GEMAOFIL_01679 tRNA-dihydrouridine(20/20a) synthase low > 93
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS27490 YeaH/YhbH family protein 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.32 65
Pseudomonas sp. RS175 0.57 PFR28_04069 hypothetical protein 0.54 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase low > 88
Pseudomonas sp. DMC3 0.57 GFF42 hypothetical protein 0.57 GFF1327 tRNA-dihydrouridine(20/20a) synthase low > 89
Pseudomonas stutzeri RCH2 0.57 Psest_3673 Uncharacterized conserved protein 0.54 Psest_2706 tRNA dihydrouridine synthase A low > 67
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_2522 FIG002076: hypothetical protein 0.55 Pf1N1B4_57 tRNA dihydrouridine synthase A low > 87
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_4632 Protein of unknown function DUF444 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas simiae WCS417 0.56 PS417_25835 hypothetical protein 0.55 PS417_07740 tRNA-dihydrouridine synthase A low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_4632 Protein of unknown function DUF444 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.54 AO353_00295 tRNA-dihydrouridine synthase A low > 101
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_1195 FIG002076: hypothetical protein 0.50 PfGW456L13_3987 tRNA dihydrouridine synthase A low > 87
Marinobacter adhaerens HP15 0.55 HP15_2934 protein YeaH 0.57 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN low > 73
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS21695 hypothetical protein 0.54 HSERO_RS17905 tRNA-dihydrouridine synthase A low > 78
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1146 FIG002076: hypothetical protein 0.52 Ac3H11_2288 tRNA dihydrouridine synthase A low > 79
Variovorax sp. SCN45 0.52 GFF2934 FIG002076: hypothetical protein 0.51 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_05233 hypothetical protein 0.53 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase low > 103
Paraburkholderia graminis OAS925 0.52 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) 0.54 ABIE53_001975 tRNA-dihydrouridine synthase A low > 113
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS36480 hypothetical protein 0.53 RR42_RS12665 tRNA-dihydrouridine synthase A 0.27 122
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS14215 YeaH/YhbH family protein 0.53 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA low > 80
Variovorax sp. OAS795 0.51 ABID97_RS10265 YeaH/YhbH family protein 0.53 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA low > 91
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS11185 hypothetical protein 0.54 BPHYT_RS08700 tRNA-dihydrouridine synthase A low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS07380 YeaH/YhbH family protein 0.56 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA low > 153
Azospirillum sp. SherDot2 0.45 MPMX19_02156 hypothetical protein 0.62 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase low > 112
Phaeobacter inhibens DSM 17395 0.44 PGA1_c02480 Uncharacterized conserved protein 0.54 PGA1_c19230 tRNA-dihydrouridine synthase A low > 62
Azospirillum brasilense Sp245 0.43 AZOBR_RS12650 hypothetical protein 0.61 AZOBR_RS15935 tRNA-dihydrouridine synthase A low > 97
Sinorhizobium meliloti 1021 0.41 SMc01266 hypothetical protein 0.42 SMc04235 tRNA-dihydrouridine synthase A low > 103
Rhizobium sp. OAE497 0.39 ABIE40_RS12545 YeaH/YhbH family protein 0.53 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA low > 107

Not shown: 2 genomes with orthologs for CSW01_09385 only; 27 genomes with orthologs for CSW01_01985 only