Conservation of cofitness between BPHYT_RS16080 and BPHYT_RS17380 in Burkholderia phytofirmans PsJN

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16080 xylulokinase 1.0 BPHYT_RS17380 ribulose-phosphate 3-epimerase 0.38 12
Paraburkholderia bryophila 376MFSha3.1 0.96 H281DRAFT_04153 xylulokinase 0.97 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase low > 103
Paraburkholderia graminis OAS925 0.96 ABIE53_003390 xylulokinase 0.96 ABIE53_003638 ribulose-phosphate 3-epimerase low > 113
Paraburkholderia sabiae LMG 24235 0.86 QEN71_RS02625 xylulokinase 0.91 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum GMI1000 0.77 RS_RS10680 xylulokinase 0.77 RS_RS14420 ribulose-phosphate 3-epimerase — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS18660 xylulokinase 0.77 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS02220 xylulokinase 0.77 HSERO_RS19425 ribulose-phosphate 3-epimerase — —
Klebsiella michiganensis M5al 0.61 BWI76_RS19340 xylulokinase 0.74 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Variovorax sp. SCN45 0.53 GFF5281 Xylulose kinase (EC 2.7.1.17) 0.65 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 127
Variovorax sp. OAS795 0.51 ABID97_RS07155 xylulokinase 0.65 ABID97_RS04905 ribulose-phosphate 3-epimerase — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS21090 xylulokinase 0.71 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Escherichia coli ECOR38 0.49 HEPCGN_14845 xylB xylulokinase 0.73 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 87
Escherichia coli ECOR27 0.49 NOLOHH_07905 xylB xylulokinase 0.73 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.49 ECD_03416 xylulokinase 0.73 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00140 Xylulose kinase 0.73 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC98 0.49 JDDGAC_19590 xylB xylulokinase 0.73 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.49 OKFHMN_15960 xylB xylulokinase 0.73 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.49 KEDOAH_12190 xylB xylulokinase 0.73 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC102 0.49 NIAGMN_13720 xylB xylulokinase 0.73 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.49 MCAODC_06475 xylB xylulokinase 0.73 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BW25113 0.49 b3564 xylB xylulokinase (NCBI) 0.73 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli ECRC62 0.49 BNILDI_03640 xylB xylulokinase 0.73 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia fergusonii Becca 0.49 EFB2_00243 Xylulose kinase 0.73 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS20385 xylulokinase 0.73 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF445 Xylulose kinase (EC 2.7.1.17) 0.72 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Rhizobium sp. OAE497 0.48 ABIE40_RS16815 xylulokinase 0.46 ABIE40_RS10105 ribulose-phosphate 3-epimerase — —
Dickeya dadantii 3937 0.48 DDA3937_RS20940 xylulokinase 0.73 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2937 Xylulose kinase (EC 2.7.1.17) 0.62 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pantoea sp. MT58 0.48 IAI47_00200 xylulokinase 0.70 IAI47_01910 ribulose-phosphate 3-epimerase — —
Agrobacterium fabrum C58 0.48 Atu4482 xylulokinase 0.46 Atu1839 ribulose-phosphate 3-epimerase — —
Enterobacter sp. TBS_079 0.47 MPMX20_00166 Xylulose kinase 0.72 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Sinorhizobium meliloti 1021 0.47 SMc03164 Xylulose kinase (EC 2.7.1.17) (from data) 0.46 SMc00511 D-ribulose-5-phosphate 3-epimerase 0.24 26
Serratia liquefaciens MT49 0.47 IAI46_00275 xylulokinase 0.74 IAI46_23685 ribulose-phosphate 3-epimerase low > 86
Dickeya dianthicola 67-19 0.47 HGI48_RS00305 xylulokinase 0.73 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.47 DZA65_RS00300 xylulokinase 0.73 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3829 D-xylulose kinase 0.73 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Rahnella sp. WP5 0.46 EX31_RS09770 xylulokinase 0.70 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Azospirillum sp. SherDot2 0.46 MPMX19_03030 Xylulose kinase 0.65 MPMX19_02946 Ribulose-phosphate 3-epimerase low > 112
Pseudomonas simiae WCS417 0.46 PS417_13655 xylulose kinase 0.69 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS15190 xylulokinase 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS15190 xylulokinase 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_1997 Xylulose kinase (EC 2.7.1.17) (from data) 0.45 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS14425 xylulokinase 0.69 ABZR86_RS12200 ribulose-phosphate 3-epimerase low > 74
Phaeobacter inhibens DSM 17395 0.39 PGA1_c14010 Xylulose kinase (EC 2.7.1.17) (from data) 0.44 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe — —
Pseudomonas sp. RS175 0.24 PFR28_01708 Xylulose kinase 0.69 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_2435 Xylulokinase 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_2435 Xylulokinase 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_25905 xylulose kinase 0.68 AO353_07240 ribulose phosphate epimerase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF4370 Xylulose kinase (EC 2.7.1.17) 0.69 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 90
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_4845 Xylulose kinase (EC 2.7.1.17) 0.69 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4423 xylulose kinase (NCBI ptt file) 0.37 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_805 Xylulose kinase (EC 2.7.1.17) (from data) 0.68 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Lysobacter sp. OAE881 0.23 ABIE51_RS03610 xylulokinase 0.69 ABIE51_RS04135 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.23 AO356_27695 Xylulose kinase (EC 2.7.1.17) (from data) 0.68 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_3037 Xylulose kinase (EC 2.7.1.17) 0.68 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.3065.1 Xylulose kinase (EC 2.7.1.17) 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Rhodospirillum rubrum S1H 0.20 Rru_A0250 Xylulokinase (NCBI) 0.57 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS16155 xylulokinase 0.38 ABZR88_RS06500 ribulose-phosphate 3-epimerase — —
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS19710 carbohydrate kinase 0.42 CA265_RS08990 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans MT42 0.16 LRK55_RS15130 FGGY-family carbohydrate kinase 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS15410 FGGY-family carbohydrate kinase 0.64 LRK54_RS11390 ribulose-phosphate 3-epimerase — —
Parabacteroides merdae CL09T00C40 0.16 HMPREF1078_RS00450 FGGY family carbohydrate kinase 0.37 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_13995 carbohydrate kinase 0.40 CA264_21180 ribulose-phosphate 3-epimerase low > 74
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS14650 xylulokinase 0.36 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase low > 56
Bacteroides ovatus ATCC 8483 0.15 BACOVA_02533 carbohydrate kinase, FGGY family protein 0.37 BACOVA_01203 ribulose-phosphate 3-epimerase — —
Synechococcus elongatus PCC 7942 0.08 Synpcc7942_2462 xylB probable sugar kinase 0.51 Synpcc7942_0604 rpe ribulose-phosphate 3-epimerase — —

Not shown: 1 genomes with orthologs for BPHYT_RS16080 only; 37 genomes with orthologs for BPHYT_RS17380 only