Conservation of cofitness between BPHYT_RS30235 and BPHYT_RS03400 in Burkholderia phytofirmans PsJN

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS30235 tartrate dehydrogenase 1.0 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.24 7
Paraburkholderia graminis OAS925 0.98 ABIE53_005023 tartrate dehydrogenase/decarboxylase/D-malate dehydrogenase 0.80 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_06345 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase 0.81 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Paraburkholderia sabiae LMG 24235 0.88 QEN71_RS32005 tartrate dehydrogenase 0.75 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Ralstonia solanacearum PSI07 0.80 RPSI07_RS07555 tartrate dehydrogenase 0.57 RPSI07_RS11625 DNA helicase RecG low > 81
Ralstonia solanacearum GMI1000 0.79 RS_RS24845 tartrate dehydrogenase 0.57 RS_RS13565 DNA helicase RecG — —
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS16145 tartrate dehydrogenase 0.58 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.78 UW163_RS16880 tartrate dehydrogenase 0.58 UW163_RS07950 DNA helicase RecG — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS21505 tartrate dehydrogenase 0.58 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Serratia liquefaciens MT49 0.76 IAI46_21025 tartrate dehydrogenase 0.39 IAI46_24905 ATP-dependent DNA helicase RecG low > 86
Acidovorax sp. GW101-3H11 0.75 Ac3H11_3259 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) 0.47 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_28225 tartrate dehydrogenase 0.41 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_4932 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) 0.41 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Variovorax sp. OAS795 0.75 ABID97_RS25885 tartrate dehydrogenase 0.46 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Herbaspirillum seropedicae SmR1 0.75 HSERO_RS07390 tartrate dehydrogenase 0.53 HSERO_RS06165 ATP-dependent DNA helicase RecG low > 78
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_26735 tartrate dehydrogenase 0.41 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_369 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) 0.41 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Klebsiella michiganensis M5al 0.74 BWI76_RS10680 tartrate dehydrogenase 0.39 BWI76_RS27440 DNA helicase RecG low > 92
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_2396 Tartrate dehydrogenase 0.41 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_2396 Tartrate dehydrogenase 0.41 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECOR38 0.73 HEPCGN_05015 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.40 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECOR27 0.73 NOLOHH_17145 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.39 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECRC62 0.72 BNILDI_15930 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.39 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECRC100 0.72 OKFHMN_26625 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.40 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01933 D-malate dehydrogenase [decarboxylating] 0.39 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 73
Escherichia coli ECRC102 0.72 NIAGMN_01440 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.40 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS19735 tartrate dehydrogenase 0.42 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Escherichia coli ECRC101 0.72 MCAODC_18785 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.40 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Pseudomonas fluorescens SBW25 0.72 PFLU_RS19735 tartrate dehydrogenase 0.42 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Escherichia coli BW25113 0.72 b1800 yeaU predicted dehydrogenase (NCBI) 0.39 b3652 recG ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli ECRC98 0.72 JDDGAC_01200 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.40 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC99 0.72 KEDOAH_01485 dmlA multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase 0.40 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BL21 0.72 ECD_01770 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase 0.39 ECD_03509 ATP-dependent DNA helicase low > 61
Castellaniella sp019104865 MT123 0.72 ABCV34_RS14695 tartrate dehydrogenase 0.42 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.51 5
Rhodopseudomonas palustris CGA009 0.67 TX73_008960 tartrate dehydrogenase 0.27 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Variovorax sp. SCN45 0.66 GFF6198 D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83) 0.44 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Bosea sp. OAE506 0.66 ABIE41_RS22540 tartrate dehydrogenase 0.26 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS02600 tartrate dehydrogenase 0.58 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3852 Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83) 0.47 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Dickeya dadantii 3937 0.66 DDA3937_RS04645 tartrate dehydrogenase 0.40 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS04525 tartrate dehydrogenase 0.40 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Pantoea sp. MT58 0.65 IAI47_17525 tartrate dehydrogenase 0.40 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Dickeya dianthicola 67-19 0.65 HGI48_RS04605 tartrate dehydrogenase 0.40 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dinoroseobacter shibae DFL-12 0.64 Dshi_0775 tartrate dehydrogenase (RefSeq) 0.27 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.52 PGA1_c17990 D-malate dehydrogenase 0.26 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Marinobacter adhaerens HP15 0.38 HP15_817 3-isopropylmalate dehydrogenase 0.39 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Lysobacter sp. OAE881 0.31 ABIE51_RS14200 isocitrate dehydrogenase 0.42 ABIE51_RS17230 ATP-dependent DNA helicase RecG — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.4057.1 Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) 0.39 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Shewanella loihica PV-4 0.30 Shew_2760 isocitrate dehydrogenase (RefSeq) 0.39 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) — —
Alteromonas macleodii MIT1002 0.30 MIT1002_00983 Isocitrate dehydrogenase [NADP] 0.39 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Shewanella sp. ANA-3 0.30 Shewana3_2890 isocitrate dehydrogenase (RefSeq) 0.40 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) — —
Shewanella amazonensis SB2B 0.29 Sama_2423 isocitrate dehydrogenase (RefSeq) 0.39 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) — —
Shewanella oneidensis MR-1 0.29 SO1538 isocitrate dehydrogenase, NAD-dependent (NCBI ptt file) 0.39 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS00740 isocitrate dehydrogenase 0.39 ABZR86_RS11840 ATP-dependent DNA helicase RecG — —
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS15050 isocitrate dehydrogenase 0.39 LRK54_RS11805 ATP-dependent DNA helicase RecG — —
Rhodanobacter denitrificans MT42 0.28 LRK55_RS14765 isocitrate dehydrogenase 0.38 LRK55_RS11530 ATP-dependent DNA helicase RecG — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_03810 leuB isocitrate dehydrogenase 0.38 OKGIIK_12090 recG ATP-dependent DNA helicase RecG — —

Not shown: 4 genomes with orthologs for BPHYT_RS30235 only; 33 genomes with orthologs for BPHYT_RS03400 only