Conservation of cofitness between Atu3481 and Atu3480 in Agrobacterium fabrum C58

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3481 enoyl-CoA hydratase 1.0 Atu3480 hydroxymethylglutaryl-CoA lyase 0.50 3
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS06190 enoyl-CoA hydratase/isomerase family protein 0.54 ABZR87_RS06250 hydroxymethylglutaryl-CoA lyase low > 80
Rhodopseudomonas palustris CGA009 0.39 TX73_011065 enoyl-CoA hydratase/isomerase family protein 0.50 TX73_013125 hydroxymethylglutaryl-CoA lyase low > 86
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS29425 enoyl-CoA hydratase 0.53 RR42_RS00955 hydroxymethylglutaryl-CoA lyase low > 128
Variovorax sp. SCN45 0.39 GFF3330 Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57) 0.48 GFF2023 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 127
Variovorax sp. OAS795 0.35 ABID97_RS02880 enoyl-CoA hydratase-related protein 0.49 ABID97_RS25100 hydroxymethylglutaryl-CoA lyase low > 91
Ralstonia solanacearum UW163 0.30 UW163_RS03110 enoyl-CoA hydratase 0.55 UW163_RS03145 hydroxymethylglutaryl-CoA lyase — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS10470 enoyl-CoA hydratase 0.55 RALBFv3_RS10435 hydroxymethylglutaryl-CoA lyase 0.33 9
Castellaniella sp019104865 MT123 0.30 ABCV34_RS13355 enoyl-CoA hydratase 0.53 ABCV34_RS14190 hydroxymethylglutaryl-CoA lyase low > 48
Ralstonia solanacearum PSI07 0.29 RPSI07_RS22845 enoyl-CoA hydratase 0.56 RPSI07_RS22880 hydroxymethylglutaryl-CoA lyase 0.41 53
Ralstonia solanacearum GMI1000 0.29 RS_RS01310 enoyl-CoA hydratase 0.55 RS_RS01280 hydroxymethylglutaryl-CoA lyase low > 80
Rhizobium sp. OAE497 0.29 ABIE40_RS20765 crotonase/enoyl-CoA hydratase family protein 0.42 ABIE40_RS20770 hydroxymethylglutaryl-CoA lyase 0.80 5
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF986 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.50 GFF1709 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 90
Rhodospirillum rubrum S1H 0.27 Rru_A2156 Enoyl-CoA hydratase/isomerase (NCBI) 0.53 Rru_A1940 Pyruvate carboxyltransferase (NCBI) low > 58
Dechlorosoma suillum PS 0.27 Dsui_0981 enoyl-CoA hydratase/carnithine racemase 0.61 Dsui_0984 isopropylmalate/homocitrate/citramalate synthase low > 51
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS02275 enoyl-CoA hydratase-related protein 0.50 LRK54_RS02285 hydroxymethylglutaryl-CoA lyase 0.92 1
Magnetospirillum magneticum AMB-1 0.27 AMB_RS03470 enoyl-CoA hydratase 0.54 AMB_RS03460 hydroxymethylglutaryl-CoA lyase low > 64
Rhodanobacter denitrificans MT42 0.27 LRK55_RS02030 enoyl-CoA hydratase-related protein 0.50 LRK55_RS02040 hydroxymethylglutaryl-CoA lyase — —
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS20610 enoyl-CoA hydratase-related protein 0.51 ABZR86_RS20630 hydroxymethylglutaryl-CoA lyase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0343 Enoyl-CoA hydratase/carnithine racemase 0.19 Echvi_3855 Isopropylmalate/homocitrate/citramalate synthases low > 79
Paraburkholderia graminis OAS925 0.26 ABIE53_005467 methylglutaconyl-CoA hydratase 0.56 ABIE53_000573 hydroxymethylglutaryl-CoA lyase 0.48 1
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS12860 enoyl-CoA hydratase/isomerase family protein 0.56 QEN71_RS01060 hydroxymethylglutaryl-CoA lyase 0.83 6
Burkholderia phytofirmans PsJN 0.26 BPHYT_RS23270 enoyl-CoA hydratase 0.55 BPHYT_RS02130 hydroxymethylglutaryl-CoA lyase 0.41 1
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS18840 enoyl-CoA hydratase 0.55 HSERO_RS23475 hydroxymethylglutaryl-CoA lyase low > 78
Acidovorax sp. GW101-3H11 0.26 Ac3H11_3192 Enoyl-CoA hydratase (EC 4.2.1.17) 0.50 Ac3H11_3018 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) — —
Azospirillum sp. SherDot2 0.26 MPMX19_01519 Enoyl-CoA-hydratase 0.55 MPMX19_03941 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy- methylglutaryl-CoA lyase low > 112
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_09325 Enoyl-CoA hydratase 0.52 OKGIIK_09340 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas simiae WCS417 0.25 PS417_19590 enoyl-CoA hydratase 0.60 PS417_17005 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas sp. S08-1 0.25 OH686_04090 Isohexenylglutaconyl-CoA hydratase 0.60 OH686_00835 Hydroxymethylglutaryl-CoA lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_01344 methylglutaconyl-CoA hydratase 0.56 H281DRAFT_02101 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS21560 enoyl-CoA hydratase 0.59 PFLU_RS18955 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS21560 enoyl-CoA hydratase 0.59 PFLU_RS18955 hydroxymethylglutaryl-CoA lyase low > 109
Alteromonas macleodii MIT1002 0.24 MIT1002_01667 putative enoyl-CoA hydratase echA8 0.53 MIT1002_01665 Hydroxymethylglutaryl-CoA lyase YngG 0.61 70
Dinoroseobacter shibae DFL-12 0.24 Dshi_1604 Enoyl-CoA hydratase/isomerase (RefSeq) 0.42 Dshi_1303 Hydroxymethylglutaryl-CoA lyase (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.24 SM_b21126 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.44 SM_b21125 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (from data) 0.76 1
Phaeobacter inhibens DSM 17395 0.24 PGA1_c10360 putative enoyl-CoA hydratase 0.44 PGA1_c10340 hydroxymethylglutaryl-CoA lyase MvaB — —
Lysobacter sp. OAE881 0.24 ABIE51_RS13190 enoyl-CoA hydratase-related protein 0.54 ABIE51_RS13205 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas putida KT2440 0.24 PP_4066 methylglutaconyl-CoA hydratase 0.58 PP_3540 Hydroxymethylglutaryl-CoA lyase — —
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_224 Isohexenylglutaconyl-CoA hydratase 0.59 Pf1N1B4_3990 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 87
Pseudomonas fluorescens FW300-N2C3 0.23 AO356_01590 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.57 AO356_01570 hydroxymethylglutaryl-CoA lyase 0.61 4
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.58 Pf6N2E2_2189 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) 0.66 4
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_20340 gamma-carboxygeranoyl-CoA hydratase 0.58 AO353_20365 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas stutzeri RCH2 0.22 Psest_1082 Enoyl-CoA hydratase/carnithine racemase 0.58 Psest_1079 Isopropylmalate/homocitrate/citramalate synthases 0.46 6
Kangiella aquimarina DSM 16071 0.22 B158DRAFT_2508 Enoyl-CoA hydratase/carnithine racemase 0.56 B158DRAFT_2506 Isopropylmalate/homocitrate/citramalate synthases — —
Shewanella amazonensis SB2B 0.21 Sama_1360 enoyl-CoA hydratase/isomerase (RefSeq) 0.56 Sama_1358 pyruvate carboxyltransferase (RefSeq) 0.71 3
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.56 Psyr_2471 hydroxymethylglutaryl-CoA lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.56 Psyr_2471 hydroxymethylglutaryl-CoA lyase low > 86
Shewanella loihica PV-4 0.21 Shew_2572 enoyl-CoA hydratase/isomerase (RefSeq) 0.56 Shew_2574 pyruvate carboxyltransferase (RefSeq) — —
Pseudomonas sp. RS175 0.20 PFR28_01258 1,4-dihydroxy-2-naphthoyl-CoA synthase 0.58 PFR28_01262 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy- methylglutaryl-CoA lyase — —
Shewanella sp. ANA-3 0.19 Shewana3_1670 methylglutaconyl-CoA hydratase (RefSeq) 0.51 Shewana3_1668 hydroxymethylglutaryl-CoA lyase (RefSeq) — —
Shewanella oneidensis MR-1 0.19 SO1895 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) 0.51 SO1893 mvaB hydroxymethylglutaryl-CoA lyase (NCBI ptt file) — —

Not shown: 7 genomes with orthologs for Atu3481 only; 11 genomes with orthologs for Atu3480 only