| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0332 | | RNA polymerase sigma-54 factor | 1.0 | Atu1445 | | two component sensor kinase | 0.70 | 1 |
| Rhizobium sp. OAE497 | 0.69 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | 0.87 | ABIE40_RS09085 | | nitrogen regulation protein NR(II) | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.64 | SMc01139 | | RNA polymerase factor sigma-54 | 0.83 | SMc01042 | | nitrogen regulation protein | 0.52 | 4 |
| Rhodopseudomonas palustris CGA009 | 0.51 | TX73_000260 | | RNA polymerase factor sigma-54 | 0.64 | TX73_013415 | | nitrogen regulation protein NR(II) | 0.50 | 24 |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | 0.60 | ABIE41_RS16790 | | ATP-binding protein | low | > 77 |
| Magnetospirillum magneticum AMB-1 | 0.47 | AMB_RS19925 | | RNA polymerase sigma-54 factor | 0.50 | AMB_RS11945 | | PAS domain-containing sensor histidine kinase | — | — |
| Rhodospirillum rubrum S1H | 0.46 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | 0.44 | Rru_A1677 | | Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 Δfur | 0.46 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.38 | CCNA_01814 | | nitrogen regulation protein ntrB | low | > 67 |
| Caulobacter crescentus NA1000 | 0.46 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.38 | CCNA_01814 | | nitrogen regulation protein ntrB | low | > 66 |
| Azospirillum sp. SherDot2 | 0.45 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | 0.51 | MPMX19_01111 | | Sensory histidine kinase/phosphatase NtrB | low | > 112 |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.49 | AZOBR_RS14425 | | ATPase | 0.61 | 15 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | 0.24 | HP15_426 | | signal transduction histidine kinase, nitrogen specific, NtrB | low | > 73 |
| Pseudomonas putida KT2440 | 0.29 | PP_0952 | | RNA polymerase sigma-54 factor | 0.23 | PP_5047 | | two-component system sensory histidine kinase/phosphatase GlnL/GlnG | — | — |
| Pseudomonas simiae WCS417 | 0.29 | PS417_04345 | | RNA polymerase factor sigma-54 | 0.22 | PS417_01640 | | histidine kinase | — | — |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_3313 | | RNA polymerase sigma-54 factor | 0.22 | Psest_3931 | | Signal transduction histidine kinase, nitrogen specific | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_05180 | | RNA polymerase sigma-54 factor | 0.23 | AO353_12150 | | histidine kinase | — | — |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.22 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.22 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | 0.20 | GFF2221 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.85 | 10 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.23 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_07035 | | RNA polymerase sigma-54 factor | 0.23 | AO356_09725 | | histidine kinase | — | — |
| Pseudomonas sp. S08-1 | 0.29 | OH686_08540 | | RNA polymerase sigma-54 factor | 0.22 | OH686_10635 | | Nitrogen regulation protein NtrB | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.23 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | — | — |
| Escherichia coli BW25113 | 0.28 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | 0.21 | b3869 | glnL | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.28 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | 0.21 | NOLOHH_06235 | glnL | nitrogen regulation protein NR(II) | — | — |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | 0.19 | HGI48_RS21230 | | nitrogen regulation protein NR(II) | low | > 71 |
| Escherichia coli ECOR38 | 0.28 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | 0.21 | HEPCGN_12735 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia fergusonii Becca | 0.28 | EFB2_00621 | | RNA polymerase sigma-54 factor | 0.21 | EFB2_04747 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | 0.23 | PfGW456L13_346 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | — | — |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | 0.21 | KEDOAH_14045 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC62 | 0.28 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | 0.21 | BNILDI_05295 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | 0.21 | OHPLBJKB_04183 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Escherichia coli ECRC101 | 0.28 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | 0.21 | OKFHMN_14105 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | 0.21 | NIAGMN_11860 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli BL21 | 0.28 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | 0.21 | ECD_03754 | | sensory histidine kinase in two-component regulatory system with GlnG | low | > 60 |
| Dickeya dianthicola ME23 | 0.28 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | 0.19 | DZA65_RS22205 | | nitrogen regulation protein NR(II) | low | > 75 |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | 0.21 | JDDGAC_17730 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC101 | 0.28 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | 0.21 | MCAODC_04605 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | 0.21 | ECOLIN_RS22300 | | nitrogen regulation protein NR(II) | — | — |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.21 | EX28DRAFT_4351 | | Signal transduction histidine kinase, nitrogen specific | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | 0.23 | Pf6N2E2_3825 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | 0.23 | Pf1N1B4_1610 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.28 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.21 | H281DRAFT_00453 | | two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL | 0.40 | 11 |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | 0.20 | MIT1002_03185 | | Nitrogen regulation protein NR(II) | low | > 70 |
| Burkholderia phytofirmans PsJN | 0.28 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | 0.21 | BPHYT_RS12940 | | signal transduction histidine kinase | 0.73 | 6 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_00173 | | RNA polymerase sigma-54 factor | 0.23 | PFR28_04945 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_04108 | | RNA polymerase sigma-54 factor | 0.21 | MPMX20_04596 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | 0.19 | DDA3937_RS00130 | | nitrogen regulation protein NR(II) | low | > 74 |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | 0.20 | BWI76_RS00390 | | two-component system sensor histidine kinase NtrB | — | — |
| Erwinia tracheiphila SCR3 | 0.27 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | 0.21 | LU632_RS22140 | glnL | nitrogen regulation protein NR(II) | — | — |
| Pectobacterium carotovorum WPP14 | 0.27 | HER17_RS20060 | | RNA polymerase factor sigma-54 | 0.19 | HER17_RS21435 | | nitrogen regulation protein NR(II) | 0.91 | 12 |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | 0.20 | QEN71_RS05670 | | nitrogen regulation protein NR(II) | 0.46 | 54 |
| Rahnella sp. WP5 | 0.27 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.20 | EX31_RS15875 | | nitrogen regulation protein NR(II) | low | > 89 |
| Pantoea sp. MT58 | 0.27 | IAI47_17185 | | RNA polymerase factor sigma-54 | 0.20 | IAI47_00455 | | nitrogen regulation protein NR(II) | 0.80 | 16 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | 0.23 | RR42_RS12985 | | histidine kinase | 0.52 | 3 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | 0.22 | ABZR87_RS11065 | | nitrogen regulation protein NR(II) | 0.44 | 33 |
| Shewanella oneidensis MR-1 | 0.27 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | 0.20 | SO4471 | ntrB | nitrogen regulation protein (NCBI ptt file) | 0.81 | 2 |
| Shewanella amazonensis SB2B | 0.27 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | 0.22 | Sama_3426 | | nitrogen regulation protein (RefSeq) | 0.82 | 1 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.20 | Shewana3_0259 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | 0.88 | 1 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_22470 | | RNA polymerase factor sigma-54 | 0.20 | IAI46_24955 | | nitrogen regulation protein NR(II) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.23 | CSW01_13860 | | nitrogen regulation protein NR(II) | low | > 62 |
| Shewanella loihica PV-4 | 0.26 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | 0.22 | Shew_3560 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | 0.88 | 1 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | 0.25 | HSERO_RS15685 | | histidine kinase | — | — |
| Ralstonia solanacearum GMI1000 | 0.26 | RS_RS02020 | | RNA polymerase sigma-54 factor | 0.23 | RS_RS06315 | | PAS domain-containing sensor histidine kinase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | 0.24 | RPSI07_RS17820 | | PAS domain-containing sensor histidine kinase | low | > 81 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS02410 | | RNA polymerase sigma-54 factor | 0.24 | UW163_RS12995 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | 0.24 | RALBFv3_RS15535 | | PAS domain-containing sensor histidine kinase | — | — |
| Acidovorax sp. GW101-3H11 | 0.24 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | 0.23 | Ac3H11_4431 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.79 | 3 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.22 | GFF5270 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 90 |
| Acinetobacter radioresistens SK82 | 0.23 | MPMX26_02592 | | RNA polymerase sigma-54 factor | 0.19 | MPMX26_01293 | | Sensory histidine kinase/phosphatase NtrB | 0.90 | 1 |
| Kangiella aquimarina DSM 16071 | 0.21 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.21 | B158DRAFT_0715 | | Signal transduction histidine kinase, nitrogen specific | low | > 40 |
Not shown: 25 genomes with orthologs for Atu0332 only; 2 genomes with orthologs for Atu1445 only