| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0030 | | phosphocarrier protein HPr | 1.0 | Atu1359 | | dnaK deletion suppressor protein | 0.60 | 1 |
| Rhizobium sp. OAE497 | 0.82 | ABIE40_RS19390 | | HPr family phosphocarrier protein | 0.95 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | — | — |
| Sinorhizobium meliloti 1021 | 0.77 | SMc02754 | | phosphocarrier HPr | 0.92 | SMc00469 | | DnaK suppressor protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.57 | Dshi_0207 | | Phosphotransferase system, phosphocarrier protein HPr (RefSeq) | 0.65 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.55 | PGA1_c01200 | | putative phosphocarrier, HPr family | 0.64 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.35 | 13 |
| Bosea sp. OAE506 | 0.55 | ABIE41_RS02695 | | HPr family phosphocarrier protein | 0.74 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.54 | CCNA_00241 | | phosphocarrier protein HPr | 0.65 | CCNA_02663 | | DnaK suppressor protein DksA | — | — |
| Caulobacter crescentus NA1000 | 0.54 | CCNA_00241 | | phosphocarrier protein HPr | 0.65 | CCNA_02663 | | DnaK suppressor protein DksA | — | — |
| Magnetospirillum magneticum AMB-1 | 0.52 | AMB_RS22225 | | HPr family phosphocarrier protein | 0.64 | AMB_RS19350 | | RNA polymerase-binding protein DksA | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.50 | A4249_RS12145 | | HPr family phosphocarrier protein | 0.60 | A4249_RS08530 | | RNA polymerase-binding protein DksA | — | — |
| Azospirillum sp. SherDot2 | 0.49 | MPMX19_02624 | | Phosphocarrier protein NPr | 0.63 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.48 | Ga0059261_0919 | | Phosphotransferase System HPr (HPr) Family | 0.60 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS01790 | | phosphocarrier protein HPr | 0.46 | RR42_RS01030 | | molecular chaperone DnaK | — | — |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS06720 | | HPr family phosphocarrier protein | 0.46 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | — | — |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS02710 | | HPr family phosphocarrier protein | 0.50 | UW163_RS03935 | | RNA polymerase-binding protein DksA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS10870 | | HPr family phosphocarrier protein | 0.50 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS01425 | | HPr family phosphocarrier protein | 0.46 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | — | — |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS01710 | | HPr family phosphocarrier protein | 0.48 | RS_RS00230 | | RNA polymerase-binding protein DksA | — | — |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS02570 | | phosphocarrier protein HPr | 0.47 | BPHYT_RS01640 | | molecular chaperone DnaK | — | — |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS22440 | | HPr family phosphocarrier protein | 0.47 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | — | — |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_000659 | | phosphocarrier protein HPr | 0.46 | ABIE53_000423 | | DnaK suppressor protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_02008 | | phosphocarrier protein | 0.47 | H281DRAFT_02205 | | transcriptional regulator, TraR/DksA family | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS00445 | | phosphocarrier protein HPr | 0.46 | HSERO_RS00840 | | molecular chaperone DnaK | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.43 | CSW01_12835 | | phosphocarrier protein NPr | 0.38 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | low | > 62 |
| Dechlorosoma suillum PS | 0.43 | Dsui_0743 | | phosphotransferase system HPr (HPr) family protein | 0.42 | Dsui_2717 | | RNA polymerase-binding protein DksA | low | > 51 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00823 | | Phosphocarrier protein NPr | 0.40 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3317 | | Phosphotransferase System HPr (HPr) Family | 0.44 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas sp. RS175 | 0.40 | PFR28_00169 | | Phosphocarrier protein NPr | 0.45 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.34 | 39 |
| Pseudomonas sp. S08-1 | 0.40 | OH686_08565 | | Phosphocarrier protein, nitrogen regulation associated | 0.42 | OH686_17280 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_07055 | | phosphocarrier protein HPr | 0.44 | AO356_16095 | | molecular chaperone DnaK | 0.40 | 14 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_3271 | | Phosphocarrier protein, nitrogen regulation associated | 0.42 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | low | > 103 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_04325 | | phosphocarrier protein HPr | 0.43 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Marinobacter adhaerens HP15 | 0.39 | HP15_2446 | | phosphotransferase system, phosphocarrier protein Hpr | 0.41 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.38 | PfGW456L13_5018 | | Phosphocarrier protein, nitrogen regulation associated | 0.42 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS04785 | | HPr family phosphocarrier protein | 0.45 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_1084 | | Phosphocarrier protein, nitrogen regulation associated | 0.43 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_05200 | | phosphocarrier protein HPr | 0.44 | AO353_14420 | | molecular chaperone DnaK | — | — |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS04380 | | HPr family phosphocarrier protein | 0.44 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS04380 | | HPr family phosphocarrier protein | 0.44 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | — | — |
| Shewanella loihica PV-4 | 0.37 | Shew_3315 | | phosphotransferase system, phosphocarrier protein HPr (RefSeq) | 0.41 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_4151 | | Phosphocarrier HPr protein | 0.43 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas putida KT2440 | 0.37 | PP_0948 | | Phosphocarrier protein HPr | 0.42 | PP_4693 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_4151 | | Phosphocarrier HPr protein | 0.43 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | — | — |
| Shewanella amazonensis SB2B | 0.34 | Sama_3092 | | phosphocarrier protein NPR (RefSeq) | 0.41 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_0668 | | HPr family phosphocarrier protein (RefSeq) | 0.41 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.34 | SO3965 | ptsO | phosphocarrier protein NPR (NCBI ptt file) | 0.41 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.33 | DvMF_2878 | | Phosphotransferase system, phosphocarrier protein HPr (RefSeq) | 0.35 | DvMF_0008 | | transcriptional regulator, TraR/DksA family (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.33 | BWI76_RS25285 | | HPr family phosphocarrier protein | 0.41 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU0830 | ptsH | phosphocarrier protein HPr (TIGR) | 0.36 | DVU2150 | dksA | dnaK suppressor protein, putative (TIGR) | low | > 55 |
Not shown: 28 genomes with orthologs for Atu0030 only; 5 genomes with orthologs for Atu1359 only