Conservation of cofitness between AO353_16875 and AO353_06550 in Pseudomonas fluorescens FW300-N2E3

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 1.0 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.32 11
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.95 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.95 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas sp. RS175 0.97 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.93 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.93 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 104
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.95 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 103
Pseudomonas fluorescens SBW25 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.95 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.95 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas simiae WCS417 0.96 PS417_05880 ribosomal protein S12 methylthiotransferase 0.96 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.88 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.88 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas putida KT2440 0.89 PP_1197 ribosomal protein S12 methylthiotransferase 0.89 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 96
Pseudomonas sp. S08-1 0.85 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.85 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_2632 ribosomal protein S12 methylthiotransferase RimO 0.85 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 67
Castellaniella sp019104865 MT123 0.77 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.56 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 48
Marinobacter adhaerens HP15 0.75 HP15_2459 MiaB-like tRNA modifying enzyme YliG 0.62 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.61 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 78
Erwinia tracheiphila SCR3 0.72 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.60 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.61 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 73
Escherichia coli ECRC102 0.72 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECOR27 0.72 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli BL21 0.72 ECD_00802 ribosomal protein S12 methylthiotransferase 0.61 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 61
Escherichia coli ECRC101 0.72 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli ECRC98 0.72 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 86
Escherichia coli BW25113 0.72 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.61 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) low > 76
Escherichia coli ECOR38 0.72 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli ECRC99 0.72 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC62 0.72 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.60 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.60 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 92
Escherichia coli ECRC100 0.72 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.61 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 80
Escherichia fergusonii Becca 0.72 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.61 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 86
Escherichia coli Nissle 1917 0.72 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.61 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Enterobacter sp. TBS_079 0.71 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.60 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Dickeya dianthicola 67-19 0.71 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO 0.60 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 71
Pectobacterium carotovorum WPP14 0.71 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.60 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Dickeya dianthicola ME23 0.70 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO 0.60 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Dickeya dadantii 3937 0.70 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO 0.60 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2522 SSU ribosomal protein S12P methylthiotransferase (EC 2.-.-.-) 0.57 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 40
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO 0.64 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 62
Acinetobacter radioresistens SK82 0.69 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.62 MPMX26_03053 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 36
Alteromonas macleodii MIT1002 0.68 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO 0.66 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 70
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO 0.61 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Ralstonia solanacearum UW163 0.65 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO 0.61 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Lysobacter sp. OAE881 0.65 ABIE51_RS08160 30S ribosomal protein S12 methylthiotransferase RimO 0.50 ABIE51_RS17450 Mur ligase family protein low > 62
Ralstonia solanacearum GMI1000 0.65 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO 0.61 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO 0.61 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 81
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO 0.62 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Dechlorosoma suillum PS 0.65 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.62 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 51
Shewanella amazonensis SB2B 0.65 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.63 Sama_0769 UDP-N-acetylmuramate (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO 0.55 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 63
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO 0.55 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.72 7
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO 0.59 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Shewanella sp. ANA-3 0.64 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.64 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.55 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase low > 52
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.60 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 128
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO 0.59 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.49 152
Shewanella oneidensis MR-1 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.63 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO 0.56 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase 0.59 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 103
Paraburkholderia graminis OAS925 0.63 ABIE53_002068 ribosomal protein S12 methylthiotransferase 0.59 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 113
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 0.62 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.50 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Variovorax sp. SCN45 0.61 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) 0.54 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) low > 127
Variovorax sp. OAS795 0.61 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO 0.54 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 91
Acidovorax sp. GW101-3H11 0.60 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.48 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.32 ABZR88_RS15425 30S ribosomal protein S12 methylthiotransferase RimO 0.16 ABZR88_RS14425 UDP-N-acetylmuramate--L-alanine ligase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS16365 30S ribosomal protein S12 methylthiotransferase RimO 0.16 CA265_RS10785 peptidoglycan synthetase low > 88

Not shown: 20 genomes with orthologs for AO353_16875 only; 5 genomes with orthologs for AO353_06550 only