| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Brevundimonas sp. GW460-12-10-14-LB2 | 1.0 | A4249_RS12445 | | radical SAM family heme chaperone HemW | 1.0 | A4249_RS13345 | | tRNA pseudouridine(55) synthase TruB | 0.59 | 3 |
| Caulobacter crescentus NA1000 Δfur | 0.58 | CCNA_00144 | | oxygen-independent coproporphyrinogen-III oxidase | 0.68 | CCNA_00035 | | tRNA pseudouridine synthase B | low | > 67 |
| Caulobacter crescentus NA1000 | 0.58 | CCNA_00144 | | oxygen-independent coproporphyrinogen-III oxidase | 0.68 | CCNA_00035 | | tRNA pseudouridine synthase B | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c35050 | | oxygen-independent coproporphyrinogen III oxidase HemN | 0.44 | PGA1_c32950 | | tRNA pseudouridine synthase B | low | > 62 |
| Azospirillum sp. SherDot2 | 0.43 | MPMX19_02574 | | Heme chaperone HemW | 0.52 | MPMX19_02524 | | tRNA pseudouridine synthase B | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_3460 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.42 | Dshi_3042 | | tRNA pseudouridine synthase B (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.40 | Ga0059261_2753 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.39 | Ga0059261_2142 | | tRNA pseudouridine(55) synthase | 0.36 | 49 |
| Rhodospirillum rubrum S1H | 0.39 | Rru_A3639 | | Putative oxygen-independent coproporphyrinogen III oxidase (NCBI) | 0.43 | Rru_A3783 | | tRNA pseudouridine synthase B (NCBI) | low | > 58 |
| Sinorhizobium meliloti 1021 | 0.39 | SMc01147 | | coproporphyrinogen III oxidase | 0.42 | SMc00321 | | tRNA pseudouridine synthase B | low | > 103 |
| Agrobacterium fabrum C58 | 0.39 | Atu0325 | | oxygen-independent coproporphyrinogen III oxidase | 0.43 | Atu0085 | | tRNA pseudouridine 55 synthase | — | — |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS01625 | | radical SAM family heme chaperone HemW | 0.42 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | — | — |
| Rhodopseudomonas palustris CGA009 | 0.38 | TX73_001700 | | radical SAM family heme chaperone HemW | 0.43 | TX73_002255 | | tRNA pseudouridine(55) synthase TruB | — | — |
| Magnetospirillum magneticum AMB-1 | 0.38 | AMB_RS22770 | | radical SAM protein | 0.50 | AMB_RS20810 | | tRNA pseudouridine(55) synthase TruB | low | > 64 |
| Bosea sp. OAE506 | 0.37 | ABIE41_RS03305 | | radical SAM family heme chaperone HemW | 0.43 | ABIE41_RS04565 | | tRNA pseudouridine(55) synthase TruB | low | > 77 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.33 | Xcc-8004.1224.1 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.26 | Xcc-8004.2004.1 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 74 |
| Dechlorosoma suillum PS | 0.32 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.31 | Dsui_2720 | | tRNA pseudouridine 55 synthase | low | > 51 |
| Serratia liquefaciens MT49 | 0.31 | IAI46_21435 | | radical SAM family heme chaperone HemW | 0.29 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_1003 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.28 | PfGW456L13_5086 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.30 | OH686_17155 | | tRNA pseudouridine(55) synthase | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS11910 | | radical SAM family heme chaperone HemW | 0.23 | ABZR86_RS06015 | | tRNA pseudouridine(55) synthase TruB | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_4593 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.28 | Pf6N2E2_3351 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_08200 | | coproporphyrinogen III oxidase | 0.28 | AO353_05550 | | pseudouridine synthase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.30 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.29 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.30 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.29 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | low | > 109 |
| Kangiella aquimarina DSM 16071 | 0.30 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | 0.29 | B158DRAFT_0108 | | tRNA pseudouridine 55 synthase | 0.61 | 34 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS11460 | | radical SAM family heme chaperone HemW | 0.27 | LRK55_RS00810 | | tRNA pseudouridine(55) synthase TruB | low | > 63 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.27 | Pf1N1B4_1159 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 87 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS11735 | | radical SAM family heme chaperone HemW | 0.27 | LRK54_RS01035 | | tRNA pseudouridine(55) synthase TruB | low | > 59 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_13390 | | coproporphyrinogen III oxidase | 0.28 | AO356_07400 | | pseudouridine synthase | low | > 104 |
| Cupriavidus basilensis FW507-4G11 | 0.30 | RR42_RS04880 | | coproporphyrinogen III oxidase | 0.29 | RR42_RS12835 | | tRNA pseudouridine synthase B | low | > 128 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS17300 | | radical SAM family heme chaperone HemW | 0.25 | ABIE51_RS08405 | | tRNA pseudouridine(55) synthase TruB | low | > 62 |
| Pantoea sp. MT58 | 0.30 | IAI47_03580 | | radical SAM family heme chaperone HemW | 0.25 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | low | > 76 |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | 0.27 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | low | > 55 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS03785 | | radical SAM family heme chaperone HemW | 0.25 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Pseudomonas simiae WCS417 | 0.30 | PS417_26760 | | oxidase | 0.28 | PS417_23960 | | pseudouridine synthase | — | — |
| Pseudomonas stutzeri RCH2 | 0.30 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.31 | Psest_0983 | | tRNA pseudouridine 55 synthase | — | — |
| Klebsiella michiganensis M5al | 0.30 | BWI76_RS24120 | | YggW family oxidoreductase | 0.26 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | low | > 92 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_04249 | | Heme chaperone HemW | 0.28 | PFR28_00092 | | tRNA pseudouridine synthase B | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 0.29 | Psyr_4178 | | tRNA pseudouridine synthase B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 0.29 | Psyr_4178 | | tRNA pseudouridine synthase B | low | > 86 |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | 0.27 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | 0.72 | 39 |
| Escherichia fergusonii Becca | 0.30 | EFB2_00947 | | Heme chaperone HemW | 0.27 | EFB2_00657 | | tRNA pseudouridine synthase B | low | > 86 |
| Escherichia coli BL21 | 0.29 | ECD_02785 | | HemN family putative oxidoreductase | 0.27 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | 0.55 | 24 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.29 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | 0.27 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | low | > 73 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | 0.26 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Rahnella sp. WP5 | 0.29 | EX31_RS02710 | | radical SAM family heme chaperone HemW | 0.28 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | low | > 89 |
| Escherichia coli ECRC99 | 0.29 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | 0.27 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECRC102 | 0.29 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | 0.27 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECRC100 | 0.29 | OKFHMN_19235 | hemW | radical SAM family heme chaperone HemW | 0.27 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | low | > 80 |
| Escherichia coli ECRC101 | 0.29 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | 0.27 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | low | > 87 |
| Escherichia coli ECRC98 | 0.29 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | 0.27 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | 0.86 | 20 |
| Escherichia coli ECOR27 | 0.29 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | 0.26 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Escherichia coli BW25113 | 0.29 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | 0.27 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF3058 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.26 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.87 | 1 |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.25 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | low | > 76 |
| Dickeya dadantii 3937 | 0.29 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | 0.25 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | 0.71 | 34 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_12160 | hemW | radical SAM family heme chaperone HemW | 0.26 | OKGIIK_05860 | truB | tRNA pseudouridine(55) synthase TruB | low | > 52 |
| Pseudomonas putida KT2440 | 0.28 | PP_5101 | | coproporphyrinogen/heterocyclic compound oxidase (aerobic) | 0.28 | PP_4710 | | tRNA pseudouridine 55 synthase | low | > 96 |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_03813 | | Heme chaperone HemW | 0.26 | MPMX20_04071 | | tRNA pseudouridine synthase B | low | > 85 |
| Shewanella loihica PV-4 | 0.27 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.28 | Shew_2825 | | tRNA pseudouridine synthase B (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.27 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | 0.28 | Sama_0963 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_00308 | | Heme chaperone HemW | 0.29 | MPMX26_02778 | | tRNA pseudouridine synthase B | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.27 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | 0.27 | MIT1002_01773 | | tRNA pseudouridine synthase B | low | > 70 |
| Marinobacter adhaerens HP15 | 0.25 | HP15_280 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.28 | HP15_3065 | | tRNA pseudouridine synthase B | low | > 73 |
| Synechococcus elongatus PCC 7942 | 0.24 | Synpcc7942_2382 | hemN | coproporphyrinogen III oxidase | 0.22 | Synpcc7942_1222 | truB | tRNA pseudouridine synthase B | low | > 38 |
| Desulfovibrio vulgaris Miyazaki F | 0.23 | DvMF_2374 | | oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.19 | DvMF_2510 | | tRNA pseudouridine synthase B (RefSeq) | low | > 51 |
Not shown: 23 genomes with orthologs for A4249_RS12445 only; 8 genomes with orthologs for A4249_RS13345 only