| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT3121 | | DNA mismatch repair protein mutS (NCBI ptt file) | 1.0 | BT3935 | | aminotransferase (NCBI ptt file) | 0.49 | 15 |
| Bacteroides ovatus ATCC 8483 | 0.97 | BACOVA_02824 | | DNA mismatch repair protein MutS | 0.94 | BACOVA_01161 | | aminotransferase, class I/II | low | > 94 |
| Bacteroides stercoris CC31F | 0.92 | HMPREF1181_RS01980 | | DNA mismatch repair protein MutS | 0.87 | HMPREF1181_RS06565 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.91 | ABI39_RS05500 | | DNA mismatch repair protein MutS | 0.78 | ABI39_RS10505 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.91 | HMPREF1058_RS11435 | | DNA mismatch repair protein MutS | 0.79 | HMPREF1058_RS14790 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.79 | HMPREF1078_RS06455 | | DNA mismatch repair protein MutS | 0.73 | HMPREF1078_RS01130 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | low | > 61 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.61 | Echvi_0960 | | DNA mismatch repair protein MutS | 0.52 | Echvi_0124 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.59 | CA264_18545 | | DNA mismatch repair protein MutS | 0.45 | CA264_01550 | | aminotransferase | low | > 74 |
| Enterobacter sp. TBS_079 | 0.35 | MPMX20_03619 | | DNA mismatch repair protein MutS | 0.28 | MPMX20_03277 | | Glutamate-pyruvate aminotransferase AlaC | low | > 85 |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS05230 | | DNA mismatch repair protein MutS | 0.29 | DDA3937_RS14825 | | alanine transaminase | low | > 74 |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS22600 | | DNA mismatch repair protein MutS | 0.28 | BWI76_RS20495 | | alanine transaminase | low | > 92 |
| Dickeya dianthicola 67-19 | 0.35 | HGI48_RS05230 | | DNA mismatch repair protein MutS | 0.29 | HGI48_RS14755 | | alanine transaminase | low | > 71 |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS05570 | | DNA mismatch repair protein MutS | 0.29 | DZA65_RS15705 | | alanine transaminase | low | > 75 |
| Enterobacter asburiae PDN3 | 0.35 | EX28DRAFT_2829 | | DNA mismatch repair protein MutS | 0.28 | EX28DRAFT_0240 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.35 | GFF4773 | | DNA mismatch repair protein MutS | 0.28 | GFF1970 | | Uncharacterized PLP-dependent aminotransferase YfdZ | low | > 78 |
| Marinobacter adhaerens HP15 | 0.35 | HP15_1047 | | DNA mismatch repair protein MutS | 0.14 | HP15_1162 | | aminotransferase, class I and II | low | > 73 |
| Escherichia coli ECRC62 | 0.35 | BNILDI_10920 | mutS | DNA mismatch repair protein MutS | 0.28 | BNILDI_12910 | alaC | alanine transaminase | — | — |
| Escherichia coli ECRC101 | 0.34 | OKFHMN_20525 | mutS | DNA mismatch repair protein MutS | 0.28 | OKFHMN_22370 | alaC | alanine transaminase | — | — |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_19705 | mutS | DNA mismatch repair protein MutS | 0.28 | HEPCGN_21580 | alaC | alanine transaminase | low | > 85 |
| Escherichia coli BW25113 | 0.34 | b2733 | mutS | DNA mismatch repair protein (NCBI) | 0.28 | b2379 | yfdZ | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.34 | MCAODC_11050 | mutS | DNA mismatch repair protein MutS | 0.28 | MCAODC_12900 | alaC | alanine transaminase | — | — |
| Escherichia coli ECRC99 | 0.34 | KEDOAH_07610 | mutS | DNA mismatch repair protein MutS | 0.28 | KEDOAH_05850 | alaC | alanine transaminase | — | — |
| Escherichia coli ECRC102 | 0.34 | NIAGMN_18295 | mutS | DNA mismatch repair protein MutS | 0.28 | NIAGMN_20145 | alaC | alanine transaminase | — | — |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_12370 | mutS | DNA mismatch repair protein MutS | 0.28 | NOLOHH_14055 | alaC | alanine transaminase | low | > 57 |
| Escherichia coli BL21 | 0.34 | ECD_02583 | | methyl-directed mismatch repair protein | 0.28 | ECD_02289 | | glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_01000 | | DNA mismatch repair protein MutS | 0.28 | OHPLBJKB_01342 | | Glutamate-pyruvate aminotransferase AlaC | low | > 73 |
| Escherichia coli ECRC98 | 0.34 | JDDGAC_24190 | mutS | DNA mismatch repair protein MutS | 0.28 | JDDGAC_26335 | alaC | alanine transaminase | — | — |
| Escherichia fergusonii Becca | 0.34 | EFB2_01179 | | DNA mismatch repair protein MutS | 0.28 | EFB2_01495 | | Glutamate-pyruvate aminotransferase AlaC | low | > 86 |
| Escherichia coli Nissle 1917 | 0.34 | ECOLIN_RS15275 | | DNA mismatch repair protein MutS | 0.28 | ECOLIN_RS13690 | | alanine transaminase | low | > 52 |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS16220 | | DNA mismatch repair protein MutS | 0.29 | HER17_RS06655 | | alanine transaminase | low | > 75 |
| Pantoea sp. MT58 | 0.34 | IAI47_04240 | | DNA mismatch repair protein MutS | 0.28 | IAI47_05575 | | alanine transaminase | low | > 76 |
| Serratia liquefaciens MT49 | 0.34 | IAI46_03800 | | DNA mismatch repair protein MutS | 0.28 | IAI46_18180 | | alanine transaminase | low | > 86 |
| Dechlorosoma suillum PS | 0.34 | Dsui_2244 | | DNA mismatch repair protein MutS | 0.27 | Dsui_2909 | | aspartate/tyrosine/aromatic aminotransferase | low | > 51 |
| Rahnella sp. WP5 | 0.33 | EX31_RS07820 | | DNA mismatch repair protein MutS | 0.28 | EX31_RS20015 | | alanine transaminase | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.33 | Psyr_1376 | | DNA mismatch repair protein MutS | 0.28 | Psyr_0468 | | Aminotransferase, class I and II | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.33 | Psyr_1376 | | DNA mismatch repair protein MutS | 0.28 | Psyr_0468 | | Aminotransferase, class I and II | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_2875 | | DNA mismatch repair protein MutS | 0.15 | Psest_1470 | | succinyldiaminopimelate transaminase | low | > 67 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18195 | | DNA mismatch repair protein MutS | 0.27 | OH686_04000 | | Glutamate-pyruvate aminotransferase AlaC | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS06285 | | DNA mismatch repair protein MutS | 0.27 | RR42_RS28540 | | glutamate--pyruvate aminotransferase | low | > 128 |
| Pseudomonas fluorescens FW300-N2E3 | 0.33 | AO353_16625 | | DNA mismatch repair protein MutS | 0.28 | AO353_03235 | | glutamate-pyruvate aminotransferase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.33 | Pf6N2E2_3035 | | DNA mismatch repair protein MutS | 0.28 | Pf6N2E2_2862 | | Uncharacterized PLP-dependent aminotransferase YfdZ | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_05875 | | DNA mismatch repair protein MutS | 0.28 | AO356_05050 | | glutamate-pyruvate aminotransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_3117 | | DNA mismatch repair protein MutS | 0.28 | Pf1N1B4_555 | | Uncharacterized PLP-dependent aminotransferase YfdZ | low | > 87 |
| Pseudomonas sp. RS175 | 0.33 | PFR28_00429 | | DNA mismatch repair protein MutS | 0.27 | PFR28_00596 | | Glutamate-pyruvate aminotransferase AlaC | low | > 88 |
| Pseudomonas simiae WCS417 | 0.33 | PS417_05680 | | DNA mismatch repair protein MutS | 0.28 | PS417_21975 | | glutamate-pyruvate aminotransferase | low | > 88 |
| Pseudomonas putida KT2440 | 0.33 | PP_1626 | | DNA mismatch repair protein MutS | 0.28 | PP_0817 | | aminotransferase | low | > 96 |
| Herbaspirillum seropedicae SmR1 | 0.32 | HSERO_RS16360 | | DNA mismatch repair protein MutS | 0.28 | HSERO_RS12800 | | aspartate aminotransferase | low | > 78 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS05765 | | DNA mismatch repair protein MutS | 0.27 | PFLU_RS23580 | | alanine transaminase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS05765 | | DNA mismatch repair protein MutS | 0.27 | PFLU_RS23580 | | alanine transaminase | low | > 109 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0355 | | DNA mismatch repair protein MutS (RefSeq) | 0.37 | DvMF_0361 | | LL-diaminopimelate aminotransferase (RefSeq) | — | — |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS00270 | | DNA mismatch repair protein MutS | 0.29 | ABCV34_RS02290 | | alanine transaminase | low | > 48 |
| Pseudomonas fluorescens GW456-L13 | 0.32 | PfGW456L13_4672 | | DNA mismatch repair protein MutS | 0.27 | PfGW456L13_1928 | | Uncharacterized PLP-dependent aminotransferase YfdZ | low | > 87 |
| Synechococcus elongatus PCC 7942 | 0.32 | Synpcc7942_2247 | mutS | DNA mismatch repair protein | 0.26 | Synpcc7942_1794 | | succinyldiaminopimelate transaminase | low | > 38 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU1649 | mutS | DNA mismatch repair protein MutS (TIGR) | 0.36 | DVU1655 | aspC4 | aminotransferase, classes I and II (TIGR) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.31 | Dshi_3466 | | DNA mismatch repair protein MutS (RefSeq) | 0.16 | Dshi_0060 | | aminotransferase class I and II (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_00908 | | DNA mismatch repair protein MutS | 0.27 | MPMX19_00804 | | Glutamate-pyruvate aminotransferase AlaC | — | — |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS20815 | | DNA mismatch repair protein MutS | 0.13 | ABID97_RS16630 | | succinyldiaminopimelate transaminase | low | > 91 |
| Variovorax sp. SCN45 | 0.31 | GFF6634 | | DNA mismatch repair protein MutS | 0.13 | GFF254 | | N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2 | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_3641 | | DNA mismatch repair protein MutS | 0.27 | Ac3H11_3720 | | Uncharacterized PLP-dependent aminotransferase YfdZ | low | > 79 |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS01455 | | DNA mismatch repair protein MutS | 0.27 | AMB_RS18860 | | pyridoxal phosphate-dependent aminotransferase | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_002655 | | DNA mismatch repair protein MutS | 0.25 | TX73_012935 | | LL-diaminopimelate aminotransferase | low | > 86 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3599 | | DNA mismatch repair protein MutS | 0.15 | GFF4553 | | N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) | low | > 90 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A3541 | | MutS 1 protein (NCBI) | 0.29 | Rru_A2411 | | Aminotransferase, class I and II (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS02125 | | DNA mismatch repair protein MutS | 0.27 | AZOBR_RS07830 | | aminotransferase | — | — |
| Agrobacterium fabrum C58 | 0.29 | Atu0345 | | DNA mismatch repair protein, MutS family | 0.28 | Atu1589 | | aminotransferase, class I | low | > 89 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS01775 | | DNA mismatch repair protein MutS | 0.29 | ABIE40_RS08645 | | LL-diaminopimelate aminotransferase | 0.39 | 13 |
| Sinorhizobium meliloti 1021 | 0.29 | SMc01125 | | DNA mismatch repair protein MutS | 0.29 | SMc00294 | | aminotransferase | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_3784 | | DNA mismatch repair protein MutS | 0.29 | Ga0059261_1288 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 68 |
| Bosea sp. OAE506 | 0.28 | ABIE41_RS03650 | | DNA mismatch repair protein MutS | 0.26 | ABIE41_RS19175 | | LL-diaminopimelate aminotransferase | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00012 | | DNA mismatch repair protein MutS | 0.27 | CCNA_01446 | | LL-diaminopimelate aminotransferase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00012 | | DNA mismatch repair protein MutS | 0.27 | CCNA_01446 | | LL-diaminopimelate aminotransferase | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS12110 | | DNA mismatch repair protein MutS | 0.30 | A4249_RS02425 | | LL-diaminopimelate aminotransferase | low | > 48 |
Not shown: 28 genomes with orthologs for BT3121 only; 4 genomes with orthologs for BT3935 only